jam2a (LOC106575111)


Basic Information

Item Value
gene id jam2a
gene name LOC106575111
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 25956422 ~ 25972398 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608961.2
CGCCCCACCAAACCCCCCTCCCTACCACAACAGTAGAATAGTAGAGAGACCGTCTACAGTGACAGCCACTCTGCAGCCGTGTGCCCTGCGGCTGGTGTAATAGTGTACAGTGAGTCCGAAAGTGCGACTTCTGAACCACCCGCGCGCTGCCTAACTGCTCAGGAAATTTTACGGAGTTTTCGAAACATAATTTCCCCAAAGGAGTGACGAGATTCTGGAATTACTGGAGTTGTGGACAAGTGCGGGAATAGGTTGTCGCTCAAGAGCAACTCATATTTCGAGGAAGGGCAGACTTTTGAACAGCGGGAGTTCAGGATGGAGAAAGCGTCACTGTTTTTTCCCCTTGTCATTCTACTGATACAATgcCTCCCCATTGTCCCTGTTACCGTGTCAACAACCACGCCCAAGGTGGAGGTCCACGAGAACTCCGATGCGGTCCTGAGCTGTGATTTTCGGACAGAGAAGGAACAGAATCCTCGAATCGAGTGGAAGAAGAAAGGAACAGATGTATCATTTGTTTACTATGAGGGACACTTCAGAGGAGCCTTTGCGGGGCGTGCAAGGATCAAGGGGGCAACGGTGACCCTACAGAGGGTGACCCAGAAAGACGCGGGCGAATACCGCTGTGAGATCACTGCCCCTCACGACACCATCACCCTGGGGGAGACTAACATCACCCTCGAAGTCTTGGTGCCCCCCCACACCCCATCCTGTGAGATCCCCAGCTCGGCCTTGACGGGCTCTGTGGTGCAGCTGCGCTGTAGGGACCAGCAGAGCATCCCCCCAGCCACCTACTCCTGGTACAAAGATGACAAGCCGCTGACCCCCTCCCGCATGGCCAACGCCACCTACCACCTCAACCCAATCACGGGCATACTGgAGTTTAAGACTGTGGCGAGAGGCGACACGGGACAGTACAGCTGTCTGGCATCCAACAAAGTGGGGCCGCCCAAGATGTGTGAGGCTAAACACATGAAGatagaGGATGTAAACATGGCAGGGGTCGTGGCTGCGGTCGTGGTCATCTGTCTGGTCATCGCCATTTGTGGCTTCGGGGGGTACTATGCACACCGTAATGGCTACTTCagcaAACACAGAGGAAGgtcctTTTGGATCCCTCAGTGTCATGGTGTGGCCCACATCAGCAACCAGGACCTCCATAGAACAAAAGACAAGACTAATGCCAACTACAACCCTCCACCCCAAGACCCTGCGGACTTCAAACACACCCAGTCCTTCATGCTGTGAGGACCTCGACAACCCCCTGGAAGACACCACTGGAGTAGTTTCATTCCACCCAAATGAATAGCTCTAAGAATAGTTAATTATATTTTTTGGGACTGACCAACCCTGCTCTCCTCACCCTTGTGGATGGATAGCAAGGGGGGGGACAGACAACTCTGCATAGAGGCCATTTATTCCTCCTGTTTTGCTTTCCCTGGGCCCTCAATGCAAGCCTATTATATTAGTCACATGGTACTCTACTTCTCTCTGGTGGCCAAGTTGTTAAACTACAGCATATCGCCATGTTGTGGTGGACCCATGGAATTACGTCCCACACATGCTCACTTCCCCCTCAACTGGCCAAAACATGAACTACCTAAATCTTATTTTATACCAAAGACGTGAACATGGCATCTGagtgtaatatactgtacatattttcTGAAGGCTATTGGATAAGGCTATTGATGTGAATTTAAGGTGAAGTTGTGCATACAAGGTAGCCATCACATTAggcctcccgagtgacgcagcatctcagtgcaagaggtgtcacgacagtccctggttcaaatccaggctgtatcacatccggtcgtgattgggagtcccatagagcggcgctcaattggcccagcgtcgtctgggtttggctgtcattgtaaataagagtttgttcttaactgaccaaTCCATTTTCTTCTGAGGGCAGTACTCGCGTAGATCTCATTCAGTCGGTTtggatttttatttaacctttacttaactaggcaagtctgttaagaacaaattcttatttacaatgatggcctaccccggccaaaccctaacgacgcagggccaattgtgcgccaccctatggga

Function

NR:

description
junctional adhesion molecule B

GO: NA

KEGG:

id description
K06735 JAM2, CD322; junctional adhesion molecule 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608961.2 True 2088 mRNA 0.51 10 25956422 25972398

Neighbor

gene id symbol gene type direction distance location
mrpl39 LOC106575108 coding upstream 7102 25939547 ~ 25949320 (+)
LOC110527579 LOC106575110 coding upstream 22058 25921719 ~ 25934364 (+)
LOC110527578 LOC106575107 coding upstream 52925 25894729 ~ 25903497 (+)
LOC110527576 LOC106575106 coding upstream 81914 25803550 ~ 25874508 (+)
LOC110528820 LOC106575143 coding upstream 187321 25767227 ~ 25769101 (+)
n6amt1 n6amt1 coding downstream 563385 26535783 ~ 26543684 (+)
LOC118965273 NA coding downstream 613121 26585519 ~ 26595151 (+)
LOC110527592 LOC106575150 coding downstream 1486296 27458694 ~ 27482580 (+)
LOC110527593 LOC106575124 coding downstream 1533511 27505909 ~ 27555139 (+)
plekha3 LOC106575131 coding downstream 1881900 27854006 ~ 27874521 (+)
G589914 NA non-coding upstream 1576 25903820 ~ 25954846 (+)
G589909 NA non-coding upstream 62458 25888950 ~ 25893964 (+)
G589734 NA non-coding upstream 352607 25587088 ~ 25608606 (+)
G589404 NA non-coding upstream 422236 25500850 ~ 25534186 (+)
G589936 NA non-coding downstream 32 25972430 ~ 26018945 (+)
G589930 NA non-coding downstream 11271 25983669 ~ 25988528 (+)
G589995 NA non-coding downstream 61062 26033460 ~ 26033669 (+)
G590025 NA non-coding downstream 122544 26094942 ~ 26095408 (+)
G590024 NA non-coding downstream 123114 26095512 ~ 26096989 (+)
G588755 NA other upstream 1050841 24904331 ~ 24905581 (+)
G587660 NA other upstream 2148422 23807722 ~ 23808000 (+)
LOC110527540 LOC106533352 other upstream 2335053 23609520 ~ 23621369 (+)
G586685 NA other upstream 2941302 23010061 ~ 23015120 (+)
G589933 NA other downstream 31532 26003930 ~ 26025309 (+)
G590936 gart other downstream 580156 26552554 ~ 26553542 (+)
G590949 LOC106575121 other downstream 605009 26577407 ~ 26577933 (+)
G592134 NA other downstream 1510652 27483050 ~ 27483796 (+)
G592445 lig4 other downstream 1731185 27703583 ~ 27707294 (+)

Expression


Co-expression Network