LOC110527755 (LOC106582604)


Basic Information

Item Value
gene id LOC110527755
gene name LOC106582604
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 40560358 ~ 40562952 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609252.2
tatttacCTGGTTCTTGCAAACTTTCTGACCCCTAAGAAATGTGGAAACGATATGACCTAAAATTTCATCAAGATCAATGTGATGTCAAGTGCAGTTTATAACCTGCTGCCAAAGCCTGCAGTGCCACTGTATCTGTAAGTGAGCCAAGAGTTTCTCTCTGCATGTGCAAGGCCCTAGGTGTCAAGTAGAGACAGCGGTCGCAATGTAAAAGCTTGTGTCAGGATATGTTTACCTGTCTAAACCTAACAAGTGGAAAGATAAATGTCCTAACACCACTCATCCATCCCAAGTTGCTTTACTGTAATGTTCGATTGGTATGAAAAATAACCAAGACTATGTAAATGTACCATCCAGGCATAACTCTGACGATCAAAATATAGGTTGTGTTTTTGAGTTGTGAGTCAATTATGACTGAAGTGCGATGGAGAGCTGATCTCCTGTTTCAGGAGACTGAGCTGAGAGATGATGATATAGAGGGATGTCTTGTTTAcggtcacacacaaacagagccAGAGGATGGAAACTAAGCAGACTTGTATTTAATTCTTTCAGATTACAAGGAGATGGCATCTTAAATCAGACCACCCTGTTGAATACACCTGTCTGAATGCTCTTCGGGAACAAGGAGACCGTGGCAGGATCATCAGGCTGGTTGTGGCGTCGCCCCAGTCCCATCTCACTGAGGAACAGAGGAGTCCCCCGAGAAACGCACAGTGATGGAGGTGCCACTGGTGAACTTTGAGAACATGGATGATATCGGCATCAACATGGGCGACCCCAGTGAGTCGGGGTACCCCACTTCACCCACCTCAGAGGCGGTGCCTGATCAAAACCTAGTCACCAATCGTGTGACGTCACAAAATTCGGCACAGCACCGTGGGCACCAGATCAGGCCTGAGGGGTTTTCTCCCTCTACACCACCTACACTGACTGCTAAAGGACAATCTAGATGCAACAGTCTGCTGTCCAACTTCAAACTCCTGATGAACAGTGAGGGTTCGCCGATTGACAGCATCTTCAATCAGCTGGTTCAGGAGTGCCGTGACAACGAAGAAGACCTGTTTGGTGAGAAGCTGGAAGTGAAGGACGGGAATCAGAAAGTGGTCATCAATATTTCAGGCATGATGTTCGAGACACAACTAAAAACACTATCACAGTTTCCAGACACCCTGCTAGGAGACCCCGCAAAAAGGATGTACTACTTCGACCCCATGAAGAACGAGTACTTTTTCGACAGGAATCGTCCAAGCTTCGATGGGATCTTGTACTTCTATCAGTCTGGGGGCAAAATTCGAAGACCGGTCAACGTCCCCTTAGAGATTTTTGCAAAAGAGATTGTCTTCTACAAATTAGGAAAAGAAGCTATGGAACAGTTCCGTGAAATTGAGGGGTTCATAACAGAACCTGAGCCGCTGTTGCCCACCAACGAGGTCCATAAGCAGTTTTGGCTCCTTTTTGAGtatccagagagttccagtgcaGCTCGGTCAGTGGCCCTGGTGTCTGTCTTTGTCATTGTCATCTCCATCTTCATTTTCTGCCTGGAAACTCTTCCAGAGTTCCGTGATGACGTAGACTTTATCACCACCTTTTCCCTGGGTCTCAATGGAACTCAGGAAGGACCTGCTTCAGTACAAAACAACTTGTTTGCCTATTTCACAGACCCCTTTTTCATTGTGGAAACTATCTGCATAGTTTGGTTCTGCTTTGAGCTTGGTGTACGCTTTGTGGTCTGCCCGAGCAAAAGTGACTTCTTCCACAACATTATGAACACCATTGACATTGTCTCTATAATCCCCTATTTTGTAACCATGGTGACAGAGCTGTGGACCACGCCAGATACAGACATCAACTCCAGCCAGAACATGTCACTGGCCATCTTACGCATCATCCGTCTAGTGCGAGTCTTCCGAATCTTCAAGCTCTCGCGGCACTCCAAGGGGCTTCAGATCCTGGGCCAAACCCTGAAAGCTAGTATGAGGGAGCTGGGTCTGCTGATCTTCTTCCTCTTTATTGGAGTCATACTCTTCTCCAGTGCCATCTACTTTGCTGAGGTGGACGAGCCCCAAACACAGTTTGTCAGTATCCCTGACGGGTTCTGGTGGGCTGTGGTGACAATGACCACTGTGGGATACGGGGACATGTGTCCTACTACTCTGGGGGGCAAAATGGTGGGGACTCTTTGCGCCATTGCCGGCGTGTTGACCATCGCCTTACCCGTCCCTGTTATCGTCTCCAACTTTAACTATTTCTACCACCGGGAGACAGAGCAAGCAGAGAAACAAGTGATTGATGATGCGACAGAGGCTGCTCAGAAAGTATCTGACGCAAACAGATATGAGTATGGTAGTGCAACCTCTCCTAGCATGAGCAAAATCAATGGTAGAGTGCAGGATGACAGGAATGACATGTAATCTGTTGATCATTGAAGTTATTATAACCAAGGGCATGACAAACTAAGAAATCAAACATATCTAAATACTAAAATGCACTGATTTAATTTTTGTTTCTGTATTTTATATTCCATTCATAGCAGCGTTTGTGCACATGGTATAGTATTCATCTCTCACAATATTCAAAATAAGAAGCTAATA
>XM_036984481.1
tatttacCTGGTTCTTGCAAACTTTCTGACCCCTAAGAAATGTGGAAACGATATGACCTAAAATTTCATCAAGATCAATGTGATGTCAAGTGCAGTTTATAACCTGCTGCCAAAGCCTGCAGTGCCACTGTATCTGTAAGTGAGCCAAGAGTTTCTCTCTGCATGTGCAAGGCCCTAGGTGTCAAGTAGAGACAGCGGTCGCAATGTAAAAGCTTGTGTCAGGATATGTTTACCTGTCTAAACCTAACAAGTGGAAAGATAAATGTCCTAACACCACTCATCCATCCCAAGTTGCTTTACTGTAATGTTCGATTGGTATGAAAAATAACCAAGACTATGTAAATGTACCATCCAGGCATAACTCTGACGATCAAAATATAGGTTGTGTTTTTGAGTTGTGAGTCAATTATGACTGAAGTGCGATGGAGAGCTGATCTCCTGTTTCAGGAGACTGAGCTGAGAGATGATGATATAGAGGGATGTCTTGTTTAcggtcacacacaaacagagccAGAGGATGGAAACTAAGCAGACTTGTATTTAATTCTTTCAGATTACAAGGAGATGGCATCTTAAATCAGACCACCCTGTTGAATACACCTGTCTGAATGCTCTTCGGGAACAAGGAGACCGTGGCAGGATCATCAGGCTGGTTGTGGCGTCGCCCCAGTCCCATCTCACTGAGGAACAGAGGAGTCCCCCGAGAAACGCACAGTGATGGAGGTGCCACTGGTGAACTTTGAGAACATGGATGATATCGGCATCAACATGGGCGACCCCAGTGAGCCTGAGGGGTTTTCTCCCTCTACACCACCTACACTGACTGCTAAAGGACAATCTAGATGCAACAGTCTGCTGTCCAACTTCAAACTCCTGATGAACAGTGAGGGTTCGCCGATTGACAGCATCTTCAATCAGCTGGTTCAGGAGTGCCGTGACAACGAAGAAGACCTGTTTGGTGAGAAGCTGGAAGTGAAGGACGGGAATCAGAAAGTGGTCATCAATATTTCAGGCATGATGTTCGAGACACAACTAAAAACACTATCACAGTTTCCAGACACCCTGCTAGGAGACCCCGCAAAAAGGATGTACTACTTCGACCCCATGAAGAACGAGTACTTTTTCGACAGGAATCGTCCAAGCTTCGATGGGATCTTGTACTTCTATCAGTCTGGGGGCAAAATTCGAAGACCGGTCAACGTCCCCTTAGAGATTTTTGCAAAAGAGATTGTCTTCTACAAATTAGGAAAAGAAGCTATGGAACAGTTCCGTGAAATTGAGGGGTTCATAACAGAACCTGAGCCGCTGTTGCCCACCAACGAGGTCCATAAGCAGTTTTGGCTCCTTTTTGAGtatccagagagttccagtgcaGCTCGGTCAGTGGCCCTGGTGTCTGTCTTTGTCATTGTCATCTCCATCTTCATTTTCTGCCTGGAAACTCTTCCAGAGTTCCGTGATGACGTAGACTTTATCACCACCTTTTCCCTGGGTCTCAATGGAACTCAGGAAGGACCTGCTTCAGTACAAAACAACTTGTTTGCCTATTTCACAGACCCCTTTTTCATTGTGGAAACTATCTGCATAGTTTGGTTCTGCTTTGAGCTTGGTGTACGCTTTGTGGTCTGCCCGAGCAAAAGTGACTTCTTCCACAACATTATGAACACCATTGACATTGTCTCTATAATCCCCTATTTTGTAACCATGGTGACAGAGCTGTGGACCACGCCAGATACAGACATCAACTCCAGCCAGAACATGTCACTGGCCATCTTACGCATCATCCGTCTAGTGCGAGTCTTCCGAATCTTCAAGCTCTCGCGGCACTCCAAGGGGCTTCAGATCCTGGGCCAAACCCTGAAAGCTAGTATGAGGGAGCTGGGTCTGCTGATCTTCTTCCTCTTTATTGGAGTCATACTCTTCTCCAGTGCCATCTACTTTGCTGAGGTGGACGAGCCCCAAACACAGTTTGTCAGTATCCCTGACGGGTTCTGGTGGGCTGTGGTGACAATGACCACTGTGGGATACGGGGACATGTGTCCTACTACTCTGGGGGGCAAAATGGTGGGGACTCTTTGCGCCATTGCCGGCGTGTTGACCATCGCCTTACCCGTCCCTGTTATCGTCTCCAACTTTAACTATTTCTACCACCGGGAGACAGAGCAAGCAGAGAAACAAGTGATTGATGATGCGACAGAGGCTGCTCAGAAAGTATCTGACGCAAACAGATATGAGTATGGTAGTGCAACCTCTCCTAGCATGAGCAAAATCAATGGTAGAGTGCAGGATGACAGGAATGACATGTAATCTGTTGATCATTGAAGTTATTATAACCAAGGGCATGACAAACTAAGAAATCAAACATATCTAAATACTAAAATGCACTGATTTAATTTTTGTTTCTGTATTTTATATTCCATTCATAGCAGCGTTTGTGCACATGGTATAGTATTCATCTCTCACAATATTCAAAATAAGAAGCTAATA
>TU691131
GCTGGAAGTGAAGGACGGGAATCAGAAAGTGGTCATCAATATTTCAGGCATGATGTTCGAGACACAACTAAAAACACTATCACAGTTTCCAGACACCCTGCTAGGAGACCCCGCAAAAAGGATGTACTACTTCGACCCCATGAAGAACGAGTACTTTTTCGACAGGAATCGTCCAAGCTTCGATGGGATCTTGTACTTCTATCAGTCTGGGGGCAAAATTCGAAGACCGG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609252.2 False 2595 mRNA 0.46 1 40560358 40562952
XM_036984481.1 False 2487 mRNA 0.45 2 40560358 40562952
TU691131 True 230 lncRNA 0.47 1 40561650 40561879

Neighbor

gene id symbol gene type direction distance location
LOC110527754 LOC106582722 coding downstream 47063 40507742 ~ 40513295 (-)
LOC110527750 LOC106582617 coding downstream 105713 40452385 ~ 40454645 (-)
LOC110527748 tulp1 coding downstream 121304 40418035 ~ 40439054 (-)
LOC110527745 LOC106582716 coding downstream 154557 40365303 ~ 40405801 (-)
smpd2b smpd2 coding downstream 199772 40348061 ~ 40360586 (-)
LOC110527756 LOC106582724 coding upstream 22956 40585908 ~ 40596388 (-)
LOC110527758 LOC105008416 coding upstream 40499 40603451 ~ 40612049 (-)
slc25a55a LOC106582726 coding upstream 170940 40733892 ~ 40749263 (-)
tshba tshb coding upstream 191297 40754249 ~ 40756219 (-)
slc16a1a LOC106582732 coding upstream 241101 40804053 ~ 40816448 (-)
G606919 NA non-coding downstream 939 40559144 ~ 40559419 (-)
G606888 NA non-coding downstream 6259 40553670 ~ 40554099 (-)
G606887 NA non-coding downstream 7151 40552817 ~ 40553207 (-)
G606917 NA non-coding downstream 8303 40551743 ~ 40552055 (-)
G606916 NA non-coding downstream 8987 40551090 ~ 40551371 (-)
G606924 NA non-coding upstream 1956 40564908 ~ 40565357 (-)
G606929 NA non-coding upstream 11198 40574150 ~ 40574350 (-)
G606953 NA non-coding upstream 54093 40617045 ~ 40617248 (-)
LOC110527741 LOC106582711 other downstream 336191 40135298 ~ 40275270 (-)
G606135 NA other downstream 719027 39838891 ~ 39841331 (-)
LOC110527723 LOC106582696 other downstream 1491530 39063005 ~ 39123578 (-)
G604484 NA other downstream 1920958 38584293 ~ 38639400 (-)
G604485 NA other downstream 1962839 38589155 ~ 38597519 (-)
G606973 NA other upstream 66297 40629249 ~ 40629880 (-)
LOC110527764 LOC106582736 other upstream 593718 41156665 ~ 41348915 (-)
G607932 NA other upstream 598196 41161148 ~ 41163397 (-)
G608888 LOC106582750 other upstream 1381619 41944571 ~ 41951244 (-)
G608900 NA other upstream 1405617 41968569 ~ 42025704 (-)

Expression


Co-expression Network