LOC110527777 (LOC106582746)


Basic Information

Item Value
gene id LOC110527777
gene name LOC106582746
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 41835678 ~ 41843620 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609282.2
TGTCCCAGCCTTTCAGACCAACTTTCATGATAGACTAACACACTCCATACTGGTACCCTGACTGCAAGCCCAGTCTCAAGTCCTCCCTCTTAGCACCAGGATTGAGGCCTCTGGTGGCTTCTCAGTGAGACGGACACCACCTTCGGCCCATGGGGAGATTCTGTAGGCTCCTACACTAGGAAAGCACACTTTTCTAAAGGAGACACCATACAGCTTGTAGGCTACGAACTCTTTTAATCTGTTCTGCTGTGAGGGTGTTTTCTTCTCCAGCCAGAGGCGACCATGTCCAGGAGGAAGGTGAGGGGACTGACGCGGACGGGGCGGCAGGTGAGCGAGGACCCTGACCTGGATGTCCTTTTGTCCAACCTGTCCCCCGAGCAGATTgaggagctggagaaggaggTATTGGTGGCCCCCAACCTGGATCTCAATGAGGAAAGAGCCATAGAGCAGCCTGCCACTAACACTGTCCGGGACCGGGATGCTAAGCTGGACAGCCGGGAGTGTCCAGGGAAGCTCAGCCAAAAGGAACAGTCTATTGAGGGGGAACCCAAGAAAGAGAGCCGGAAACAAGAGTACCTGAGGAAGATGGGCCTGAGTCAGGAGGGGAAAGAAGGAAGGGGGATCAGAAGGCAATCAAGTATCACAACAGAACGAGTGAACAAGATGGAGGAGAGAAATGACAAAAGACCAGACCGCACTAAAGAGGACAGGGTCAGCCTGTCCAATAGATATAGGACAGAGGAGAGCAAAGACAAAGAAGTGAAAGAGACCCCTAGAGAAAGAttcaggagagaagagaggaaggacgCTGAAGTGAAAGACACAACTGGAGACAGATCCAGGAGAGAGGAAAGTAACGACAGCGATGTAAAGGATACAACTCGAGAAAAAtacaggagaggggagaagagggacgGTGATGTTAAAGAAACGGCTAGAGACAGATTCGGGAGACAGGAGAGTCGGGACCGTTTAGAGAAAGGGGATGCCAAGGAAAGGGAGAGGAACGAGGACAACAAGCTTATGGAGAAAAGAGACAGGAGGTTGAGCACCAGTAATAAGACAAAGGAAATGATCTCCAAGTTACAAGAGAAGAAAGAAAACGAGGCGATCAAggggaaagaaagaaaagaggatATGAAAAAAAGAGATGAGAACAAGACAAGGGGACTTGTGTCAAAGTTTGTGGAGAAGCAAAGTCGGGTTGAAGAGAGTCAAACAGACGATAAAAAAAACAGAGTGGAAGAGAAGGACAAGCCAGGGAAGGACAAGTCTGACTCAAAACTTGAGAGACAACAGTCGCCAGCTGAGAAGGAGAGCGGAAGTGAGAAGCAAGTGGAGAAGGAAGATCCCAAGGAGAAAGCGAAAGAAGACGGTAAGGAGAATAAGAAAGATGTGGGGTTAAAGCATAAGGAAAGTATAAAAGAGAAAGATAGGAGGAGTATTAGAGAcaaggaaagagaagagaaaagggaaACTGAGGAGAAAAGGGGAAAAGATGCAAACGAAGGACTAAAATCCAGCAAGGGTGAGGAACAGCGTGGGAACTGTGTGACGAACAAGAGCACACCGAGCAAGACCAAagtagaggaggaagaagacGAGGACTCCAGCATGTTCAGTGACCTCATAGAGCAAGTTTGCAGCAACGACCCCACCATGACAGAGCTCAACGTGAACAACTCGGAGGTCATCAAGGCTAAAACACTCATCCAGTTTGCAGAGGCCTTGAATAAAAACACCCATATTAAGACTTTTGCCCTGGCCAACTGCCGTGCTGATGACCACGTGGCCTACGCCATTGCGGGCACCTTACGCACCAATACGTCTATCACAAGCATCAACCTGGATTCCAACCTTCTCACCCCCAAGGGTATAATGGCCCTGATCCAGGCCTTGCAGAAAAACACTACACTCACCGAGCTGCGCTTCCACAACCAGAGACACATCTGCGGAGGcaagacagagatggagatgaCCAAGATACTGAAAGACAACACCACCCTCCTGAAGCTGGGCTACGGCTTTGAGCTGGCCGGCCCACGCATGACCATGACCAACATCCTGAGCCGCAACATGGACAAGCAGCGACAGCGGCGCCTACAGGAGCAGAAGCTGGCCCAGGCCAACGGTGAGAAGAAAGGGATGCTGGAGGTGCCCAAGACTGCTGGGGGATTCCTCAGGGTTTCCCCCAAGGCTTCCCCTAAACCCTCCCCACACCCCTCACCAATGCCCTCCCCAAAGTTGACTCAAAAAAGAGGACCAGGAGGGggccctcctccaccccctcctcctgggggcccacccccacctccaccccccaTGCTACACATAGACTCCCTGCGAAACTCCCTGACGCCCGCATCACAGAGGAAGATGGATGATAAGGCCAACAAAGCCGGTGGTACGAACTCTAGGGACCAACTCCTGGACTCCATTAGGAATACCAATATGAAGAAACTGAAGAAGGTTGCGGTACCAAAACTGTTGCAGTAATCCCCTGGAATGGAGAGTGAAAGCCAAGGAAGAGGAAGGACACAGATCTCACGGAGGATCGAAACTCCAACACATCCCACGCACAGACTGACACCCAGTCTTACCACTGTGCTGCGGGATGGATAAGGCAGGCAAGCAGAGAGTGAAAATTGAGATTTCTATTGGATGTACAGCCTTCACTGTGCCACGAGTTCTCTCCTCAAACTTAACACTGGACCGCAGGGACCccgtggagggagaagagggcagAGTTTTGCAGCAGGACGTGCCCTGGGGTCCTAGTTGTCTGCCTTTGTCTGTGTTGATGCTTTTCCTGTCATTTGCACTAGATTATGAAGCATAAGGTGACAAAAGCATATGATATGTAAGATGTGGGGGCGTGTAAAAttctataaaaaaatatatatacaaaactaCTTTTAACATTCATTGAAATATTGGATGGtaattttacattttatttgtttgTGGAGGGAATCACTTGGAATTTTGCCCAAACTGCTGATTCTCCATGGCATATTATCAGGGAATTCAAACGGGGTTCGATTTCAGCAATTCACAGGGGGAGAAAGGGTGGTTTGTAATGTGTGTCATTGCCATATCTCAAGACTGACATCTCAGGCAAAGTTTTACACATAAAAAGCAACCTAGAATCCCAGTCTTCTTAGAAAGACTCAGGAAGGAAGTAAAGTTTTTGGGGGATTTAAGTATGGTCAACCTTTAAGTACTAACAAAGTTATACAACAACGTTTAGTAATAACAATgttatttataaatatattttcataCATTTTGCTCAAAATAATGATTCTAACATAGAAAGAAATGAGAATGTCAAAAGCAAAGAAAACAAATCACAGAATACAGCGACAACAATGCAAACATATTCCAGGCTAGATGTCTTACTACAAGTCAAGTCTTACGACTAAAGATTTtaaaacagtttattttattaCCATGGCAGAGCAAAATTAATGTCTCTTTCAGTGTGATGATATTGTACAGAGCGGTTTGCCACTCTAAAAGTGACTATTGACTATTGCATGCATAATGTGGTTTCTGTTTCATTTTGGACTTCATTAATATGTTACAGAGCCTATAAAAAAAGTACTGGTATGTTTGCAATTAAAAGTGTCATATAATACACTTTATTATAATAACTTCACAATCAAGTACATCTTcaaaaaaaaataacatgaaGATACAGGATGGAGACACATCTGTCCATTATTTGATGGTAgtctaatacagtacagtaggcaACTGATACATTTACTGTATTTTGTTTGAATGTTTAACCTGTACATGCAATATTTTCCTTTCAGGTGGACATTTCCCCGGTTTTCAATGTAATATATCTTAATAATACAATTTATACTGCTTGAGAAATATTAAGTTGTCTATGTCAGTCTGTCTATTGATTGGTTGACGGAATCAGAAATTATTTCCAAAATCTATATAAGATATGTTGTCTCAGTAGAGCCCTGTAACCTGCAAAGATATTGAAACTGATGTGAGAGGACATTTTGTGACCAAATGGACAATTCTGTGTGCCACGCCAAGTATATGATGTCAAATAGATTATAATGAAAGgtttgtgtgcacacacacagagcaatgaAGTGTACCTTAGCAAAGCTAATGATCTAAtgcactgttgtgtgtgtgtgtatttcaatCTGATTTCCATTTCTGCACACGTCTGGCTGACAACACTAAATGGAATGTGATCTTTAGTGAGAGAGAGTATACACTGTTTCCAACAGATTCACACCTACAAGATCATGTCCTTCACACAACTGACAAAAGAGAGGGAACTTAACTGTCTACTTCTAGTAGTGAATATGTGTTACCATGTTTTGACATCTGACACTGGGGGTTGAGAGGGATAGCGACAGGCCAGTTTACGTCTTGACTGCCTCGGCATCCACGAAATGCCTATATTTGGTCATTTCTCAATGAAGACTTGCACAGTGATTCATTCCTTTCTTGTTCTTAATAATGGGAGGTGGGCCAGCGGTCTGTCTGGCTCTCCCCATGAACACTGGTCTGatggggagagggaatggaggaggagtgggagtggGGGTAGTAGGAAAAAATCTGAATAGATGTAGATTATTGGATTAAATGCAAACAGTGGGCTATTCCTGAATCTCCTAAGAAATTATTGCCTTTTGTAATTACACTTCATATGAGCTTTTCCTAACCTCTGGCCTGAATCATTTAAAGGAGAGAATAAAGAAAGAGTTTGGTTTTTGGAGAG

Function

NR:

description
leiomodin-1-like

GO: NA

KEGG:

id description
K22030 LMOD; leiomodin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609282.2 True 4765 mRNA 0.45 3 41835678 41843620

Neighbor

gene id symbol gene type direction distance location
LOC110527776 LOC106582745 coding downstream 1299 41821741 ~ 41834379 (-)
rap1b LOC106582744 coding downstream 17791 41798070 ~ 41817887 (-)
cttnbp2nla LOC106582741 coding downstream 268245 41542907 ~ 41567433 (-)
wnt2ba LOC106582740 coding downstream 299388 41520228 ~ 41536290 (-)
capza1a LOC106582739 coding downstream 350208 41469566 ~ 41485470 (-)
LOC110527778 LOC106582747 coding upstream 716 41844336 ~ 41861084 (-)
LOC110527779 LOC106582748 coding upstream 11603 41855223 ~ 41873805 (-)
LOC110527780 LOC107554191 coding upstream 36554 41880174 ~ 41925608 (-)
edem1 LOC106582760 coding upstream 924467 42768087 ~ 42773999 (-)
LOC110527792 LOC106565990 coding upstream 931857 42775477 ~ 42793038 (-)
G608782 NA non-coding downstream 14100 41819143 ~ 41821578 (-)
G608748 NA non-coding downstream 135170 41700297 ~ 41700508 (-)
G608745 NA non-coding downstream 136795 41698671 ~ 41698883 (-)
G608681 LOC106582742 non-coding downstream 218968 41615585 ~ 41616710 (-)
G608242 NA non-coding downstream 325971 41509468 ~ 41509707 (-)
G608841 NA non-coding upstream 18649 41862269 ~ 41862560 (-)
G608887 NA non-coding upstream 110554 41954174 ~ 41956189 (-)
G608954 NA non-coding upstream 212646 42056266 ~ 42059029 (-)
G608956 NA non-coding upstream 215605 42059225 ~ 42059315 (-)
LOC110527764 LOC106582736 other downstream 486779 41156665 ~ 41348915 (-)
G607932 NA other downstream 672281 41161148 ~ 41163397 (-)
G606973 NA other downstream 1205798 40629249 ~ 40629880 (-)
LOC110527741 LOC106582711 other downstream 1611511 40135298 ~ 40275270 (-)
G606135 NA other downstream 1994347 39838891 ~ 39841331 (-)
G608888 LOC106582750 other upstream 100951 41944571 ~ 41951244 (-)
G608900 NA other upstream 124949 41968569 ~ 42025704 (-)
G610047 NA other upstream 992127 42835747 ~ 42836069 (-)
G610182 NA other upstream 1263507 43107127 ~ 43162969 (-)
G610190 NA other upstream 1269528 43113148 ~ 43116144 (-)

Expression


Co-expression Network