LOC110527792 (LOC106565990)


Basic Information

Item Value
gene id LOC110527792
gene name LOC106565990
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 42775477 ~ 42793038 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609307.2
CGCCCGGTGCCCCACCGCTTAGCATAATCGAATCCTCCCACTGCCAGCTTTCTGCCGAAGTTCAGTGGGAATATCAAATTCAAGATGCTGACACTTATAAACCGGCTTTTGGACTGGTTTAAGTCCCTCTTTTGGAAAGAGGAGATGGAGTTAACCCTGGTTGGACTTCAATACTCGGGGAAAACGACATTTGTTAATGTGATAGCTTCTGGGCAATTTAGTGAAGACATGATCCCAACAGTCGGATTCAACATGAGGAAGGTCACAAAAGGCAACGTTACCATCAAGATCTGGGATATAGGAGGGCAGCCGAGGTTCAGGAGCATGTGGGAGCGCTACTGTCGGGGAGTTAACGCAATTGTATATATGGTGGACGCAGCAGACCATGAGAAGGTGGAAGCTTCCAGAAATGAGCTACACAATTTGTTAGACAAGCCTCAGTTGCAAGGAATTCCTGTTTTGGTGCTTGGCAACAAAAGAGATCTCCCCAGTGCTCTAGATGAGAAGCAGCTCATTGAAAAACTGAACTTGGCAGCTATTCAAGACCGAGAGatttgctgctactctgtttcctgcaaagagaaagacaacatgGATATCACACTGCAGTGGCTCATCCAACACTCAAAATCTCAGAGAAACTGAATGTACCGGAACTGCACCCTCCCAGCTCCATCTGCCATATTACCCTCATGCCACACCATGCTCACGCTGATGTATAGTTGTccctcctaactcagttgctgcaCTGTGCTGCTTGTGCCTCCCCCTGTTGTTGTTATCTCCCCACAACCCCTTGCACTACTACAAGATGGTA

Function

NR:

description
ADP-ribosylation factor-like protein 8B-A

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0007059 chromosome segregation biological_process
GO:0005765 lysosomal membrane cellular_component
GO:0005819 spindle cellular_component
GO:0031902 late endosome membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07955 ARL8; ADP-ribosylation factor-like protein 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609307.2 True 817 mRNA 0.48 7 42775477 42793038

Neighbor

gene id symbol gene type direction distance location
edem1 LOC106582760 coding downstream 1478 42768087 ~ 42773999 (-)
LOC110527780 LOC107554191 coding downstream 849869 41880174 ~ 41925608 (-)
LOC110527779 LOC106582748 coding downstream 901672 41855223 ~ 41873805 (-)
LOC110527778 LOC106582747 coding downstream 920815 41844336 ~ 41861084 (-)
LOC110527777 LOC106582746 coding downstream 931857 41835678 ~ 41843620 (-)
LOC110527110 LOC106582620 coding upstream 12304 42805342 ~ 42815037 (-)
si:ch73-361p23.3 LOC106582621 coding upstream 49675 42842713 ~ 42845808 (-)
cplane2 rsg1 coding upstream 91918 42884956 ~ 42887226 (-)
LOC110527797 hspb7 coding upstream 95580 42888618 ~ 42889492 (-)
LOC110527798 epha2 coding upstream 98272 42891310 ~ 42911129 (-)
G609980 NA non-coding downstream 8086 42760566 ~ 42767391 (-)
G609825 NA non-coding downstream 245103 42528854 ~ 42530374 (-)
G609873 NA non-coding downstream 262649 42512451 ~ 42512828 (-)
G609871 NA non-coding downstream 266019 42509157 ~ 42509458 (-)
G609859 LOC106582757 non-coding downstream 278159 42491494 ~ 42497318 (-)
G610024 NA non-coding upstream 6290 42799328 ~ 42799529 (-)
G610025 NA non-coding upstream 10439 42803477 ~ 42803768 (-)
G610040 NA non-coding upstream 35651 42828689 ~ 42828929 (-)
G610046 LOC100380853 non-coding upstream 40539 42833577 ~ 42834270 (-)
G610049 NA non-coding upstream 48020 42841058 ~ 42841287 (-)
G608900 NA other downstream 749773 41968569 ~ 42025704 (-)
G608888 LOC106582750 other downstream 824233 41944571 ~ 41951244 (-)
LOC110527764 LOC106582736 other downstream 1426578 41156665 ~ 41348915 (-)
G607932 NA other downstream 1612080 41161148 ~ 41163397 (-)
G606973 NA other downstream 2145597 40629249 ~ 40629880 (-)
G610047 NA other upstream 42709 42835747 ~ 42836069 (-)
G610182 NA other upstream 314089 43107127 ~ 43162969 (-)
G610190 NA other upstream 320110 43113148 ~ 43116144 (-)
G610183 NA other upstream 334773 43127811 ~ 43167320 (-)
G610185 NA other upstream 358532 43151570 ~ 43157089 (-)

Expression


Co-expression Network