G576963 (LOC106574593)


Basic Information

Item Value
gene id G576963
gene name LOC106574593
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 13839239 ~ 13873273 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU658058
tttctctctctctctctctctctctctctctctctctctctctctctctttctaaatatGTGTCAATGGAACAGTTCCGTTTACCCCTGTCGTGGAGCTCTGGTAGTGCTGCGGTAGCGCGTGAAGTCTACTTTGAACGGACGGGTCACCTGCAGCTTCCCCCGTCGGTAAATACATGCTTATCATGTCCCTCAAGTCCCCGGGACACGGGGCGCGAGAGTGAGTAGAGACCGGAGGGCTCACACTCGGTTCCGATTTCACCAGAGAGCCCAGCGTGCCCATCGACCCGGACGAAGCGACACCAGAGCTCTGGTGCTGCGTGTAGGTGATCCCGCCGTAGCCGGACGGAGAGGCGCTCATGTAGCTTTGAGAGTTCGAGatggggctgtactggagggccgACATGTCATAGCGGTGCATGGGCTGGGGGTTGtgcgggtggtggtggtgtgagtggtggtggtgcccGCTGCCCGGGTGCTGGCTGTAGGCGAGCTGAGCTTCCTGCATCATGGCCGCGGCCGCCGCAGCTGCAGCCACCTGCCCCGAGTACGCACCGTTCGCCCAGCCGTTCATGTGCGCGTAGCTGGCAGCAGACGCACCACCGTGACCCCCGGGACTGTCTAACCTCTGTCCGACCCCAGGGCTCATCCCTAGACCGACACCCCCACCCCCTGTCCCGGTAAGCAGCCCACCGGCCAAAGAGTATTTGTCCTTTTTTAACAGTGTCTTGGTCTTCCGTCTCGGTCTGTATTTATAATCCGGATGCTCCTTCATGTGCATAGCTCGTAGCCGCTTCGCCTCGTCGATGAAGGGTCTCTTCTCCGCCTCGGACATCACCTTCCACTCGGCGCCGAGCCGCTTGCTGATCTCGGAGTTGTGCATTTTGGGGTTCTCCTGAGCCATCTTCCGCCGCTGGCCCCGGGACCAAACCATGAAGGCGTTCATCGGTCTCTTTACGCGGTCTTGGTTGACTTTGTTCCCATTGTTTGATCCTCCCGTGTGCCCCGAATTCGTGTTCGTTTGGGGCACTGGGGAGTGTAGATCAGTCTCCATCATCATACTATACATTCACCTGGCGTTAACTTTTTCAACCAATACACGGAAACATTCAGTCACGGCACCTCCACACTGCTGGCACACACCGTCACTTGCGCAAATCAACCCTCccggaaaaaataaataaagatggaACGAAGAAATACAATCCAAAGTAAAAGGTACTTCGATAAACTTTTCCTTCCTTCTCTGTATTAGTCGTTTTCTCCTCTTGTTTTTTCCACATCCAGCTCGATGAAAAGCGTCTCTTTGAGCTACTTTCTGTGCCTATAGTAGTAAAGTTATGG
>TU658059
tttctctctctctctctctctctctctctctctctctctctctctctctctttctaaatatGTGTCAATGGAACAGTTCCGTTTACCCCTGTCGTGGAGCTCTGGTAGTGCTGCGGTAGCGCGTGAAGTCTACTTTGAACGGACGGGTCACCTGCAGCTTCCCCCGTCGGTAAATACATGCTTATCATGTCCCTCAAGTCCCCGGGACACGGGGCGCGAGAGTGAGTAGAGACCGGAGGGCTCACACTCGGTTCCGATTTCACCAGAGAGCCCAGCGTGCCCATCGACCCGGACGAAGCGACACCAGAGCTCTGGTGCTGCGTGTAGGTGATCCCGCCGTAGCCGGACGGAGAGGCGCTCATGTAGCTTTGAGAGTTCGAGatggggctgtactggagggccgACATGTCATAGCGGTGCATGGGCTGGGGGTTGtgcgggtggtggtggtgtgagtggtggtggtgcccGCTGCCCGGGTGCTGGCTGTAGGCGAGCTGAGCTTCCTGCATCATGGCCGCGGCCGCCGCAGCTGCAGCCACCTGCCCCGAGTACGCACCGTTCGCCCAGCCGTTCATGTGCGCGTAGCTGGCAGCAGACGCACCACCGTGACCCCCGGGACTGTCTAACCTCTGTCCGACCCCAGGGCTCATCCCTAGACCGACACCCCCACCCCCTGTCCCGGTAAGCAGCCCACCGGCCAAAGAGTATTTGTCCTTTTTTAACAGTGTCTTGGTCTTCCGTCTCGGTCTGTATTTATAATCCGGATGCTCCTTCATGTGCATAGCTCGTAGCCGCTTCGCCTCGTCGATGAAGGGTCTCTTCTCCGCCTCGGACATCACCTTCCACTCGGCGCCGAGCCGCTTGCTGATCTCGGAGTTGTGCATTTTGGGGTTCTCCTGAGCCATCTTCCGCCGCTGGCCCCGGGACCAAACCATGAAGGCGTTCATCGGTCTCTTTACGCGGTCTTGGTTGACTTTGTTCCCATTGTTTGATCCTCCCGTGTGCCCCGAATTCGTGTTCGTTTGGGGCACTGGGGAGTGTAGATCAGTCTCCATCATCATACTATACATTCACCTGGCGTTAACTTTTTCAACCAATACACGGAAACATTCAGTCACGGCACCTCCACACTGCTGGCACACACCGTCACTTGCGCAAATCAACCCTCccggaaaaaataaataaagatggaACGAAGAAATACAATCCAAAGTAAAAGGTACTTCGATAAACTTTTCCTTCCTTCTCTGTATTAGTCGTTTTCTCCTCTTGTTTTTTCCACATCCAGCTCGATGAAAAGCGTCTCTTTGAGCTACTTTCTGTGCCTATAGTAGTAAAGTTATGG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU658058 False 1346 lncRNA 0.55 2 13839239 13873273
TU658059 True 1348 lncRNA 0.55 2 13839239 13873273

Neighbor

gene id symbol gene type direction distance location
LOC110527351 LOC106575518 coding upstream 33196 13714651 ~ 13806043 (+)
cdadc1 LOC106575509 coding upstream 244481 13584213 ~ 13594758 (+)
LOC110527343 LOC106575507 coding upstream 255586 13574849 ~ 13583653 (+)
ebpl ebpl coding upstream 265538 13569310 ~ 13573701 (+)
LOC110527340 LOC106575504 coding upstream 272742 13553095 ~ 13566497 (+)
tsga10 LOC106574631 coding downstream 258168 14131441 ~ 14143542 (+)
LOC110527359 LOC106574634 coding downstream 272938 14146070 ~ 14159585 (+)
LOC110527360 LOC106574621 coding downstream 288626 14161899 ~ 14166522 (+)
LOC118965342 NA coding downstream 345080 14218353 ~ 14230983 (+)
LOC110527363 tm182 coding downstream 378013 14251286 ~ 14259513 (+)
G576962 NA non-coding upstream 7412 13831479 ~ 13831827 (+)
G576960 NA non-coding upstream 14740 13820259 ~ 13824499 (+)
G576956 NA non-coding upstream 27846 13811174 ~ 13811393 (+)
G576917 NA non-coding upstream 28800 13806631 ~ 13810439 (+)
G576949 NA non-coding upstream 64507 13771746 ~ 13774732 (+)
G576998 NA non-coding downstream 28179 13901452 ~ 13905811 (+)
G576999 NA non-coding downstream 35523 13908796 ~ 13909470 (+)
G577118 NA non-coding downstream 41173 13914446 ~ 13914661 (+)
G577119 NA non-coding downstream 49562 13922835 ~ 13923252 (+)
G577120 NA non-coding downstream 51006 13924279 ~ 13924695 (+)
G576241 LOC106575516 other upstream 349502 13486516 ~ 13489737 (+)
G576161 NA other upstream 631750 13173312 ~ 13207489 (+)
G576160 NA other upstream 666165 13172784 ~ 13173074 (+)
G575758 NA other upstream 1296758 12542017 ~ 12542481 (+)
LOC110528829 LOC106574706 other upstream 1370488 12400616 ~ 12474139 (+)
G577180 LOC106574637 other downstream 242063 14115016 ~ 14116345 (+)
G577261 NA other downstream 299250 14172523 ~ 14180064 (+)
G577561 NA other downstream 532823 14406096 ~ 14406598 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000009_09565012_09566010 SOX1A, SOX1B, SOX1 coding CI01000009 null 9564446 ~ 9568007 (-)
bowfin (Amia calva) AMCG00014370 sox1a,LOC105893305,LOC106586732,LOC101064967,LOC107692134,LOC107718482 coding CM030128.1 CM030128.1 11392389 ~ 11393405 (+)