G589734


Basic Information

Item Value
gene id G589734
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 25587088 ~ 25608606 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU672521
CTCCACCctgctcttctcctcctttttctTGCCAAACCTTAAGAGCCCAAATCCTTTTTTCTTGGCCTTTTTCTCCTGGTCCTCAGAATCCTCGGTTTTCTTCTTCACTTTTTCTTtgcttttcttctctttcttcttccctttggtcttcttcttcttcttccctgcCTCTGATTCAATCTGGTCCTGGCGGGATGAGCCACTGACGGGAGTTTCTCGGCCTGAGCTCTGCTCTGACAGGTCATC
>TU672520
ACCTTAAGAGCCCAAATCCTTTTTTCTTGGCCTTTTTCTCCTGGTCCTCAGAATCCTCGGTTTTCTTCTTCACTTTTTCTTtgcttttcttctctttcttcttccctttggtcttcttcttcttcttccctgcCTCTGATTCAATCTGGTCCTGGCGGGATGAGCCACTGACGGGAGTTTCTCGGCCTGAGCTCTGCTCTGACAGGTCATCGTCCTCCGGCTCCGAGGGCCCATCGTAGGACTTGTCGATGGCGGTGCGGAAGCTCTGGTTGCAGCCCCTCCCCCGCACCATGTGGGGCCTGGGGCGGTGGAAGGGCACCTGGCTCTGCTGGCTCAGCTGCCGGGCCTCCGACACGGCCGACTGGAGACTCTCCAAGGAGCAGGACTTCCATAGCCCCAAGGTGGGACCCAGGTCACTCCCCCTGGATGAGGACTCtgagaaggggagagacagggagggagacccCGGTCAGCATGGATAGAAGGAAGGAGGACGGGaagtggaaagagag

Function

NR:

description
partitioning defective 3 homolog B-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU672521 False 246 lncRNA 0.48 2 25587088 25603815
TU672520 True 512 TUCP 0.58 2 25603605 25608606

Neighbor

gene id symbol gene type direction distance location
LOC110527571 LOC106575097 coding upstream 240781 25342711 ~ 25346307 (+)
mdh1b mdh1b coding upstream 245778 25337411 ~ 25341310 (+)
LOC100136274 LOC100136274 coding upstream 265163 25315200 ~ 25321925 (+)
LOC110527567 LOC106575093 coding upstream 274574 25301800 ~ 25312514 (+)
spp2 spp2 coding upstream 373477 25203120 ~ 25213611 (+)
LOC110528820 LOC106575143 coding downstream 163412 25767227 ~ 25769101 (+)
LOC110527576 LOC106575106 coding downstream 199735 25803550 ~ 25874508 (+)
LOC110527578 LOC106575107 coding downstream 290914 25894729 ~ 25903497 (+)
LOC110527579 LOC106575110 coding downstream 317904 25921719 ~ 25934364 (+)
mrpl39 LOC106575108 coding downstream 335732 25939547 ~ 25949320 (+)
G589404 NA non-coding upstream 52902 25500850 ~ 25534186 (+)
G589358 NA non-coding upstream 155505 25431350 ~ 25431583 (+)
G589347 NA non-coding upstream 168056 25418455 ~ 25419032 (+)
G589339 NA non-coding upstream 180104 25406710 ~ 25406984 (+)
G589330 NA non-coding upstream 186915 25399798 ~ 25400173 (+)
G589909 NA non-coding downstream 285135 25888950 ~ 25893964 (+)
G589914 NA non-coding downstream 300005 25903820 ~ 25954846 (+)
G589936 NA non-coding downstream 368615 25972430 ~ 26018945 (+)
G589930 NA non-coding downstream 379854 25983669 ~ 25988528 (+)
G588755 NA other upstream 681507 24904331 ~ 24905581 (+)
G587660 NA other upstream 1779088 23807722 ~ 23808000 (+)
LOC110527540 LOC106533352 other upstream 1965719 23609520 ~ 23621369 (+)
G586685 NA other upstream 2571968 23010061 ~ 23015120 (+)
LOC110527523 stat1-2 other upstream 2883267 22684527 ~ 22722539 (+)
G589933 NA other downstream 400115 26003930 ~ 26025309 (+)
G590936 gart other downstream 948739 26552554 ~ 26553542 (+)
G590949 LOC106575121 other downstream 973592 26577407 ~ 26577933 (+)
G592134 NA other downstream 1879235 27483050 ~ 27483796 (+)
G592445 lig4 other downstream 2099768 27703583 ~ 27707294 (+)

Expression


Co-expression Network