G593006


Basic Information

Item Value
gene id G593006
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 28568098 ~ 28578328 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU675982
GGTAGCAGGATAACAAGATTGTTATATTTATGcaccaaatggttgttttatttaataaagtaaggactctctctctctcctttcagagTTAACTGAGATGAGTCTTTATGGAGCTTGGGCTGGCAACTGATTAAGTGATGGCTTggtgttaaaaaaaaacacagctgGCATTCCATAGAGCAGATGTGGTGGGTGTCACCGAGATGGCcaggaggaacagaacaaagGCCTTACTAGTCCTAATTatcctggcatctgggaaacAGCACGAGAGGCAGATGACCAGAGGAAAACCCAAAGTGGCTTATAGTACCTCCAATGTATATGGGAGAGGTGGAACCAAGCATTCTGGGTATCAGCTATATAAACTGTGCATTGTCTGTAAAGAGTAGGCTCTCAGCTCAACAGTCAAGACTTTTGTGTCAACGGTTTCagtattgcaataattaatcgatattgactaaagatgattgtttgaagaaatgacaaagtctctctcactctctacataGAATATTCCACCATACAATGCTGCCTGTTGGTGATACAACAGCTAAAGGGGAAGTAATCGTGGAAGTGATGAAGTCCAAGTGTGCCTAATGAGGTGCAGGTGTACGTAATGATGGTTGCTATGTGTGCGTAATGATAGTTTGCCAGgactggtggttagtagaccggcaaAGTCGAGCGCCAGAGCGTGATAGAACCCCCACCGACGTGCAGCTCCAGCCACAGGACAGCCCCGAAGGCGAGGAGCGGGCCAGTCGGCGAAGGTGGAAATCTCGGATGATGTTGGGATCTTGAATGTCATCCACTGGAACCCAAAAGCACTCCTCtggaccatacccctcccagtccaccagatacTGGAACTGACCCCCATGACGTCGGGAGTCCAGGAGGGATCTGACGTCATCTGACGGGCTTCCTTCGATGtccaggggaggtggaggggtgtctTTGGAGATGGCATAAGCCAGGAGACCAGAAACCCCCATGCTGATGAGGGAAACATGAAAAGAGGGTGAGATAAGGTAGTTCTAGTGGGGAGCTGTAATTGGTACGTTATTTCATTGATCCAGCTTCCGGTAGGTCAGGCAGAGGGGGAGGTTCCTGGTGGAAGGCAGACGCGATCAACAGGATGAAACACGGGAGCCTCACTGCAGTGGCGGTCCGTCTGCTCTTTCTGGCGGCAGACGGCGCATTGGAGCCTCACCTGGGCAGTGTTCCAAACCTCCTCTGCAGGAGCTTCTGGCTCTCGGTCCACGGAGCCAGGGCCGGTTGGTACCCCGGGACGCACTGGAAGGGTGACAGCCCAGTGGTGGAGTGACAAAGTGAATTCTGGGCATACTCCACCCAGGGAAGGAACCGGGCCCACTTCCCCTGCCGGTCCTGGCAGTGACTCCTAAACTCAGGCACTCTGACCAGCTTGAGCGCAACCAAAACCACGTTTGGCGAATCATCCTTGGCACAGCATATCTCAGATACAAGGCTGCACTAAATTCATTATCACTACCCTCATTACATGAGCAAAGAGATTAATTTTGCCTGGACGTTTTCCTCGTTAAAGGTCCCTTTACAAGACAAGCTAACTGACATCTTATCCACAGCCCAAGACTGAGAGATACAAGCAGTCACACATGCCTTCCTTTGGTCACCCCAAccctaaatgtttttttttaacataaatcagCCTGCTCTCGTCAATGGTTtttgtatgcagatgactctGCTTATGTCCCATAAGAAAATGAAAATACTCAGTGCAGTTATCCAATATCAGCAAATAGATTTTTTGATAAATCTTTCTCTGCATCTTGGAAAAACGCAATCGATCTTATTTGGTTCCAGAGCAAAGCTTGCAAGGTCCCCTGTTTTAGTGTCAAAGTTGGCAACTTAGAAGTtactcttcagtgggtcatatgattgagtgtagtctggcccaggagtgtgaaggtgaacggaaaggctctggagcaacgaaccgcccttgctgtctctgcctggccggttcccatctttccactgggattctctgcctctaaccctattacaggggcttagtcactggcttactggtgctctttcatgccgtccccaggaggggtgtgtcacttgagtgggttgagtcactgatgtgatctttctgtctgggttggcgcaccCCCCTTAGGTtctgccgtggcggagatctttgtgggctatactcggcctggtctcaggatggtaagttggtggttgaagatatccctctagtggtgtgggggctgtgctttggcaaagtgggtggggttatatccttcctgtttggccctgtccgggggtatcatcagatggggccacagtgtctcctgacccctcctgtctcagcctccagtatttatgctgcagtagtttatttgtcgggggctagggttagtctgttatatctggagtacttcccctgtcttatccggtgtcctgtgtgaatttaagtatgctctctctaattctctctttctttctctctctcagaggacctgagccctaggaccatgcctcaagactacctggTATGCTGACTGCTTGCTGTCCCTagttcacctggccgtgctgctgccccagtttcaactgttctggctgcggctatggaatcctgacgtgttcaccggatgtgctacctgtcccagacctgctgtttttaactctagagacagcaggagtggtagagatactcttaatgattggctatgaaaagccaactgacattttactcctgaggtgctgacttgctgcaccctcgacaactactttgattattattatttgaccatgctggtaatttatgaacatttgaacatcttggccatgttctgttataatctcc
>TU675983
GGTAGCAGGATAACAAGATTGTTATATTTATGcaccaaatggttgttttatttaataaagtaaggactctctctctctcctttcagagTTAACTGAGATGAGTCTTTATGGAGCTTGGGCTGGCAACTGATTAAGTGATGGCTTggtgttaaaaaaaaacacagctgGCATTCCATAGAGCAGATGTGGTGGGTGTCACCGAGATGGCcaggaggaacagaacaaagGCCTTACTAGTCCTAATTatcctggcatctgggaaacAGCACGAGAGGCAGATGACCAGAGGAAAACCCAAAGTGGCTTATAGTACCTCCAATGTATATGGGAGAGGTGGAACCAAGCATTCTGGGTATCAGCTATATAAACTGTGCATTGTCTGTAAAGAGTAGGCTCTCAGCTCAACAGTCAAGACTTTTGTGTCAACGGTTTCagtattgcaataattaatcgatattgactaaagatgattgtttgaagaaatgacaaagtctctctcactctctacataGAATATTCCACCATACAATGCTGCCTGTTGGTGATACAACAGCTAAAGGGGAAGTAATCGTGGAAGTGATGAAGTCCAAGTGTGCCTAATGAGGTGCAGGTGTACGTAATGATGGTTGCTATGTGTGCGTAATGATAGTTTGCCAGgactggtggttagtagaccggcaaAGTCGAGCGCCAGAGCGTGATAGAACCCCCACCGACGTGCAGCTCCAGCCACAGGACAGCCCCGAAGGCGAGGAGCGGGCCAGTCGGCGAAGGTGGAAATCTCGGATGATGTTGGGATCTTGAATGTCATCCACTGGAACCCAAAAGCACTCCTCtggaccatacccctcccagtccaccagatacTGGAACTGACCCCCATGACGTCGGGAGTCCAGGAGGGATCTGACGTCATCTGACGGGCTTCCTTCGATGtccaggggaggtggaggggtgtctTTGGAGATGGCATAAGCCAGGAGACCAGAAACCCCCATGCTGATGAGGGAAACATGAAAAGAGGGTGAGATAAGGTAGTTCTAGTGGGGAGCTGTAATTGGTACGTTATTTCATTGATCCAGCTTCCGGTAGGTCAGGCAGAGGGGGAGGTTCCTGGTGGAAGGCAGACGCGATCAACAGGATGAAACACGGGAGCCTCACTGCAGTGGCGGTCCGTCTGCTCTTTCTGGCGGCAGACGGCGCATTGGAGCCTCACCTGGGCAGTGTTCCAAACCTCCTCTGCAGGAGCTTCTGGCTCTCGGTCCACGGAGCCAGGGCCGGTTGGTACCCCGGGACGCACTGGAAGGGTGACAGCCCAGTGGTGGAGTGACAAAGTGAATTCTGGGCATACTCCACCCAGGGAAGGAACCGGGCCCACTTCCCCTGCCGGTCCTGGCAGTGACTCCTAAACTCAGGCACTCTGACCAGCTTGAGCGCAACCAAAACCACGTTTGGCGAATCATCCTTGGCACAGCATATCTCAGATACAAGGCTGCACTAAATTCATTATCACTACCCTCATTACATGAGCAAAGAGATTAATTTTGCCTGGACGTTTTCCTCGTTAAAGGTCCCTTTACAAGACAAGCTAACTGACATCTTATCCACAGCCCAAGACTGAGAGATACAAGCAGTCACACATGCCTTCCTTCG

Function

NR:

description
uncharacterized protein LOC109890125

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU675982 False 2866 lncRNA 0.49 3 28568098 28578328
TU675983 True 1653 lncRNA 0.50 2 28568098 28569788

Neighbor

gene id symbol gene type direction distance location
LOC110527602 LOC105007064 coding upstream 200068 28306267 ~ 28368030 (+)
LOC118965275 LOC106575153 coding upstream 309656 28221625 ~ 28258442 (+)
LOC100653476 LOC106575134 coding upstream 399897 28145536 ~ 28168201 (+)
plekha3 LOC106575131 coding upstream 693577 27854006 ~ 27874521 (+)
LOC110527593 LOC106575124 coding upstream 1013343 27505909 ~ 27555139 (+)
mtx2 mtx2 coding downstream 88088 28666416 ~ 28686793 (+)
LOC110527611 rbm45 coding downstream 176148 28754476 ~ 28780185 (+)
LOC110527622 LOC106564406 coding downstream 334312 28912640 ~ 28921397 (+)
LOC118965279 LOC106595049 coding downstream 397155 28975483 ~ 28977613 (+)
LOC118965280 NA coding downstream 409018 28987346 ~ 28992237 (+)
G593005 NA non-coding upstream 693 28566830 ~ 28567405 (+)
G592993 NA non-coding upstream 9076 28558685 ~ 28559022 (+)
G592990 NA non-coding upstream 12889 28554730 ~ 28555209 (+)
G592699 NA non-coding upstream 395143 28169546 ~ 28172955 (+)
G592684 NA non-coding upstream 429736 28022903 ~ 28138362 (+)
G593012 LOC100196534 non-coding downstream 7970 28586298 ~ 28587444 (+)
G593028 NA non-coding downstream 32290 28610618 ~ 28618334 (+)
G593046 NA non-coding downstream 68928 28647256 ~ 28647456 (+)
G593051 NA non-coding downstream 75895 28654223 ~ 28654854 (+)
G593059 NA non-coding downstream 109882 28688210 ~ 28688881 (+)
G592445 lig4 other upstream 860804 27703583 ~ 27707294 (+)
G592134 NA other upstream 1084302 27483050 ~ 27483796 (+)
G590949 LOC106575121 other upstream 1990165 26577407 ~ 26577933 (+)
G590936 gart other upstream 2014556 26552554 ~ 26553542 (+)
G593144 NA other downstream 256881 28835209 ~ 28841083 (+)
G593171 NA other downstream 313835 28892163 ~ 28892425 (+)
G593283 NA other downstream 481370 29059698 ~ 29064592 (+)
LOC110527619 LOC106578599 other downstream 751344 29329584 ~ 29503787 (+)
G593513 LOC106610831 other downstream 949699 29528027 ~ 29528910 (+)

Expression


Co-expression Network