G597798


Basic Information

Item Value
gene id G597798
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 32411928 ~ 32412354 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU681105
TAACAaattaaatcaaagtttattggttacatacagaGATTAGCTGATGttacgaaatgcttgtgtttctagctcattCAGTGCAGTAACACAATATCAATACGCAAATAATCCAAAAATTCCACACTGCTTTCCTAAAATTGAAttggccaatacagtactgtaatatatgCAATTTACTTAGCAGACACATTTATCCAAGTGACAACAATCCACCATTGTGGTATGTGACCCCAGTTGGATTCAAACCCACAACTCTGGTGTTGCTCGTGCCATGCTCTTATCAAGTGAGTCAAAATCAGACCACAACAATACAtgcagtgtcttcagaaagtattcataccccttgacttattccacattttcttgtgttacagcctgaattcaaaatggattaaatatattttcgtttctccacccatctaca

Function

NR:

description
pyruvate dehydrogenase [acetyl-transferring]-phosphatase 1, mitochondrial-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU681105 True 427 lncRNA 0.36 1 32411928 32412354

Neighbor

gene id symbol gene type direction distance location
LOC110527657 rbm39 coding upstream 3930 32345648 ~ 32407998 (+)
LOC110528942 NA coding upstream 154534 32196966 ~ 32257394 (+)
LOC110531742 LOC106594194 coding upstream 398725 32007023 ~ 32013203 (+)
LOC110527653 LOC106582631 coding upstream 695701 31204504 ~ 31716227 (+)
LOC118965379 NA coding upstream 1337665 31073345 ~ 31074263 (+)
nfs1 nfs1 coding downstream 55659 32468013 ~ 32480794 (+)
rbm12 rbm12 coding downstream 68582 32480936 ~ 32492404 (+)
LOC110527660 LOC106565032 coding downstream 76513 32488867 ~ 32519712 (+)
fer1l4 LOC106582641 coding downstream 111456 32520230 ~ 32620619 (+)
unm_sa1614 LOC108424671 coding downstream 237187 32649541 ~ 32765702 (+)
G597793 NA non-coding upstream 59597 32341595 ~ 32352331 (+)
G597646 NA non-coding upstream 378727 32032947 ~ 32033201 (+)
G597632 NA non-coding upstream 389985 32021735 ~ 32021943 (+)
G597629 NA non-coding upstream 398402 32013318 ~ 32013526 (+)
G597566 NA non-coding upstream 414597 31965209 ~ 31997331 (+)
G597794 NA non-coding downstream 375 32412729 ~ 32413587 (+)
G597787 NA non-coding downstream 2012 32414366 ~ 32417474 (+)
G597790 NA non-coding downstream 5287 32417641 ~ 32418797 (+)
G597908 NA non-coding downstream 18827 32431181 ~ 32431414 (+)
G597914 NA non-coding downstream 27323 32439677 ~ 32439878 (+)
G596297 NA other upstream 1329638 31081721 ~ 31082290 (+)
G596168 NA other upstream 1508041 30903179 ~ 30903887 (+)
G593774 LOC106593940 other upstream 2379307 30031959 ~ 30032621 (+)
G593513 LOC106610831 other upstream 2883018 29528027 ~ 29528910 (+)
G599004 NA other downstream 823459 33235813 ~ 33236636 (+)
G599123 NA other downstream 878172 33290526 ~ 33295528 (+)
G600013 NA other downstream 1553935 33966289 ~ 33966755 (+)
G600431 NA other downstream 2346993 34759347 ~ 34759658 (+)
G600531 NA other downstream 2558774 34971128 ~ 34971405 (+)

Expression


Co-expression Network