G599005


Basic Information

Item Value
gene id G599005
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 33237383 ~ 33239788 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU682387
tcattatctcatgaggagagagatgggtgccTGACCCTGGTGAGGCTCTCATGGCCATCAACGCCAGGGGCAGGGCTTCGACCCATTTCAACTTCGACCCGGCACATACGTTTGACTTGCGCGTTCCATGAGATCTTGGGATTGTGGCCTATAACTGACTTCGCATCCTCCCCCGCCGCTGGaattgcctctacccatttggaaaacctatccaccatCACTAATAGGTATTGTTTCCCATTAACCACCTTATCCGCCCCCATGTCTGTGTATTCTATGCTAATAACCTGAAATCATGCATTAGGTAATgggtatgagcccattggtgttcgatatggtttctttgggttgtgtctgtcacaaacattgcattcgtcacaaaataaatcataaaataaataagtcagtcatattttttatgtgagggtcttttggagggtctttagtttgccttcgtgtgtgtgtgggccatgtgcttctcataaaagttctgggtccatcagtgtggactgcttcatgggcatgggctgagtctcTATAGATATTcacagtctttccttttcctctgatgaggacctgcgtcaatccgatgatttcagctaatttggccgatgctggttgagggatgatggctgattgaagggtgacattacgaggtgagctgttttttcaatagcttttgctactgcagcaacgtatctggagcatgttgactgtcctacctcaatgtggtcaagtttgGAAGAGTAGTGCATCAagacccgtctctccccctcttgtttctggaataggacggatgaggtgaatccttccctttcagaaacatccaaatggaacttgttcttgtagtcaggtgcagtcagagctgctgccgctgatagatctgttttcaggagtgctatggctgttgatgcttcagccgtccaggccaggggtgcatggaggttccttgatcgtaggatggccggtgctgccaccccctctgggccacacacaatggtacaacacctgataggaggggtcaggtgcatcctgtcttcgtcccagtctgcagtgtagaggcagtcatcagtttctgttgcattgagtgtgcaatggatctcagcttggggagtcttatatgggtgcagagtgtagatttgagctttcagttggttgaacttaaactggatgtgaggggtggcaggccctgtgggtaggcattttGGCCAGTACACTTCTGGGGTTTCAGACAGTGTGGGCATCTTTTATGGCCAGGGCATGGTGTTCCCTGCCATACCTTGAAACTGtggttggttgtaatcttgctgttgctgctgcatgtGGCTGGGCCCTGGGTGGTTGTATTGTAGAGGAGggggtcctcttcctcctcctcctcatcctgtgTTCGTGGCTTTGGGTAGTAGTATTTTCATTGCAGTTAGTGTATCCATGTAGaggctcctccatgtaggctgggCATCTGTCCCATCAAAGCGGTCTTCCCAGACTGGCACTCAACGAAGCGTGGATCAACTGCTGGGCGTAGGGGAAGTTGGTAGGCCCCTTCCTGCTCCTTTCAGTGCTTGTGTCAAGCCTATGATTTCAGCTAATTGTCTGTGTTTGGAGTAGAGGAGAACTGAATAAGATCGTGGCCTTCTCTCTTTAGGAGGCCCGGTTGAGATCCACCTTCCCTTCCTTGTGGGTAGTTCAGCAGGGACCCACCTGGGCCTTGTAGTGCTGTGGGGCTTGAGCAATCGGGCCTTTCTTCACAGACGAGGTGGCCTTCTTGAATCCCCACAGTCATGTTCCCTTttagctgtcctcccctcaccatGAAGACCGGGGCCTGTATGGCtgctggtgtggtgtgggttTTTAAATGGGTTGTGTGGGAGGTATGCGAATGGATTTTGTGAATAGGGAGGTGGCACTTCAGTCTTCTCTTCCTGTGGCAGTGGCGGGTATGGAGAGAGCGGGGCCGATGGGGTGGTCACggtgggtggtggtgtgttgtggttgttgtttgtGCCTTCTCTGACGTCATCTGAGGCCCCAGCAAGCACCCCCATCATATCAGGTTTCTTTTGTGGGCATGTCCTTTTTTTCACCTCTATTGCCCATGTCCCTATTCTCAGCTCcgcctccactctctctctctccttcgttcCTTTTTTCTTGAAAAAAAATGGCTGCTATTATTTTCTGCCTCACTCTCTTAGCCTAATTTCCCCCCATATCTTCTTTATTGTTTTATATTCCTGTTTTCCTCCTGCCCTTTCCTGTATTCTCTGATCTAAATATTCATTGAATTTGAGTTTGGGAACGGTAATTGAGGCCATATTGACGATTCACTATGTCTGGGTCCGATAAAAAATTATgtaaaacaattaaaaacaacTAAATGTTGCACATTGCACTATG

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU682387 True 2406 lncRNA 0.49 1 33237383 33239788

Neighbor

gene id symbol gene type direction distance location
sdc4 LOC106582650 coding upstream 21471 33205314 ~ 33215912 (+)
map1lc3a map1lc3a coding upstream 357641 32848895 ~ 32879742 (+)
unm_sa1614 LOC108424671 coding upstream 474767 32649541 ~ 32765702 (+)
fer1l4 LOC106582641 coding upstream 616764 32520230 ~ 32620619 (+)
LOC110527660 LOC106565032 coding upstream 717671 32488867 ~ 32519712 (+)
LOC110528943 NA coding downstream 51918 33291706 ~ 33297076 (+)
LOC110527673 LOC106582652 coding downstream 259632 33499420 ~ 33562457 (+)
or134-1 LOC106582596 coding downstream 355436 33595224 ~ 33596343 (+)
LOC110528945 LOC106582597 coding downstream 376401 33616189 ~ 33617281 (+)
LOC110528946 LOC106582609 coding downstream 383449 33623237 ~ 33624475 (+)
G599006 LOC106595915 non-coding upstream 1682 33234534 ~ 33235701 (+)
G598999 NA non-coding upstream 8687 33228435 ~ 33228696 (+)
G598998 NA non-coding upstream 9609 33227468 ~ 33227774 (+)
G598929 NA non-coding upstream 115349 33117420 ~ 33122034 (+)
G598909 NA non-coding upstream 136036 33101048 ~ 33101347 (+)
G599007 NA non-coding downstream 487 33240275 ~ 33240638 (+)
G599082 NA non-coding downstream 10208 33249996 ~ 33250503 (+)
G599098 oser1 non-coding downstream 105059 33344847 ~ 33362168 (+)
G599163 NA non-coding downstream 122568 33362356 ~ 33362706 (+)
G599164 NA non-coding downstream 124343 33364131 ~ 33364371 (+)
G599004 NA other upstream 747 33235813 ~ 33236636 (+)
LOC110531742 LOC106594194 other upstream 1227453 32007023 ~ 32013203 (+)
G596297 NA other upstream 2155093 31081721 ~ 31082290 (+)
G596168 NA other upstream 2333496 30903179 ~ 30903887 (+)
G593774 LOC106593940 other upstream 3204762 30031959 ~ 30032621 (+)
G599123 NA other downstream 50738 33290526 ~ 33295528 (+)
G600013 NA other downstream 726501 33966289 ~ 33966755 (+)
G600431 NA other downstream 1519559 34759347 ~ 34759658 (+)
G600531 NA other downstream 1731340 34971128 ~ 34971405 (+)
LOC110527686 LOC106582662 other downstream 3334099 36573811 ~ 36582978 (+)

Expression


Co-expression Network