G599442 (LOC100136192)


Basic Information

Item Value
gene id G599442
gene name LOC100136192
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 33815706 ~ 33836048 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU682847
AACTGATAAAACTTTTATTTCACTTTAAATTGTCTTTTACATTTTCCTGATAACATGTAGGGTGAAACTAGAACTGTTTTAAAAGACATACAAATCTAGTATTACATCAATAACCAGGGgctgttttttttgtgtatttttgttTTAATGCTATTCTAAATTTTCACAACCACGTGCGCGCTAAGCAATATAAACCATCACAGAAGCAAACTTTAGGCAGAATACTGGTCAGTAAAAACAAAGCAATTGGAGATACCAGATATACAGACAGGCTCGGTTCCACATTCACTACTGCATTTTTTTAATTAAGCGTAGAATAACTGCCATTTAATCAGCTAACGGGGAGATTTTTTTCAGTGCATGAAATATTGTCTTCAGCAAGACTGAACCAGATGAATTCAACACCTAAGTGGAATGTTATGGTGATGACAAAGTATTGTGACACTGAGTGAATTCAGCTACTTCTTCAAGTTCCTTGCACTACTCCAGAATCTAACCCATCCACTGACCGCATTCCACTACAATATGGTCTCTGATAGACCCTTAAGTCTGGAGATACACAAAACAAAAGCATCAATGCCATCTCTGACTGACACAATTTACATAAGGGGACTTGCTTACACACTCTTCGTGGGCAAGAGCATGCATTCTCTTATTGTTTCCTTTATGAAatctaacttttgactggtcagTTTGGACTGTCAGCATAAGGCCTTCAAGAAAGGCTTTAATAACCAATATGTAAAAGTTCAACGTAAAACAGCTTTAAGGTGTTTCTTTGCAAGCAGGTTAACAAAATTTAAGAcagatttaaaatgtattttaaaagggTTTACAATTTACAGTTTTGAACCAATGTGCAAGTCACTATTACGCAAAGCAAAAAAGTaacatttaagaacaaaatagtATTATTATACTAATGTCAAACAGCACCTTTTTGTCAACTGTTCTAGTACATACCATTAGGAGAATGCTCCGGTTTgttcaaaaaatatataacatcTTGAAGGTAGACTCTGAAATGACGTcaatgcagaaagtaaacagcatagtgggtctaTTTCCGCAACTAAGAGCGCTGAAGTGGGAGCTCAACTTTCACTCTGTCTTGGTCTCGTACCTACCACACTAACAATGTGAAGCAAACCTGTGCGCATGCACAGATACTGTGTGACCGTGTAAGACCAAAGTCttgctcatctcaatatctgcagTGCTGCAACGTTATTTCGCTGAGTCTATCTTTAATGTTAGGTTCTaatggaatgttttttttcttttcagCTGGACATACATTGAATGGCAAAACCTAGGGTCCCTTGTATTCATTTTAGTTTCAGATCCAAAATAAAATGTACAATACACAGCAATATGCATGTTAGTCAGTGTCACAATACAACCTCTTCTACCATTCTCTATGAGGCCACAGCAGAATTGCACTGCTACATACAGTACTGAATTTTAGCGACCAGAACTTGTGATTATGTGGAGAAAAACTAAGCATCACAGTGTTTGTTGAAAATAAACGGACAGTTTAATGACCTTTTTGAATAAAAACCAGCAATCGCCAGTACACTAGCAAAGCAAAAAAGGATACTAAAATGCATATCTTGCTAGGTGAAAGAACATATCTTTATGAAATGTTAGGAGAGAATCAAAAGGGGAAGGGGGGGTGAATGGCCTTGCCACTCAACCGGGTAAATTTCTTTTTCTTTTATCCTCACAAAACAATACTCTGCTTGTTAACAACTGAGCATATCTGAGAAAGGGCACAACTGGTAGGTCAGGTACAATTCATGCTGCTTGTCATACAGAAAGGGAGGGGGCTGGATGGAGCAGGGATGTATGGGCTGTATATGTGTAAAATAAGAGAAAGAAGAGTGTGGGTGGATTAACAGTGATGTGCAACGCCTTTAGTTCTCCCCTTCGCCGGCATCCCCCTCGTCACCCTGGTTTTCTGATGTCCACAGAGTGAGATTGTCCCTTAGTAGCTGCATGATCAAGGTGCTGTCTTTGTAAGAGTCCTCGTTCAAGGTGTCAAGTTCGGCGATCGCTTCATCGAAAGCCGCCTTCGCCAAACTGCAGGCTTGCTCGGGGGAGTTGAGGATCTCGTAATAGAAGACGGAAAAGTTGAGAGCGAGGCCCAGCCTGATGGGGTGTGTCGGCTGCATGTCCTTCTTGCTGATGTCAAATGCCTCCTGGTAGGCCTGCTGGGAGTTCTCCACTGTGGTCTTTTTTGAGTCTCCAGATGCCACCTCGGACAGATATCTGTAGTAGTCACCTTTCATTTTAAGGTAGAACACCTTGCTTTCTGCCTGAGTCGCATTGGCAATGAGGTAATTGTCGAGGAGTGCCAGCACATCCTTGCAGATGTCCTGCAGCTCGGCCTCAATCTTCTCGCGGTATTCACGGGCCATCTGCTGCTTCTTCTCGTTGCCTTCGGTCTTCTGCTCGATGCTGGAGATGACGCGCCAGGAGGAGCGACGCGCCCCCACGACATTCTTGTAGGCCACCGACAGCAGGTTGCGCTCCTCGTTGGAGAGCTCGCCGCCCTGCTCCGTCACCGCTTTCATCGCCGCCGCCATGTCGTCATAGCGTTCGGCCTGCTCGGCCAGCTTAGCCTTCTGTACCAGGTCGTTCTTGTCCATGTCGGGGATTTAGCTTGTATTTTGAATCCTGCTTTTTCTCTAAACGATGGGAGTACCAAGCTGTCCTCCGTTCGCTGCTCGGGATTTTCAGGGCAGTACCACTTCCGCCTGCGCTAACACTTCCGCTTCCTCTAAACTCCACCCCTCCCCCCGCCagtatctatggtaacagcaCTCCGGGGTTTCCTAAGCATTCTGCAGGGTAGTTGACGTCATAGAGAGTATGCGAGCCACTATGCGATGACGTAAGTGGTCA

Function

NR:

description
14-3-3 protein beta/alpha-1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU682847 True 2907 lncRNA 0.43 6 33815706 33836048

Neighbor

gene id symbol gene type direction distance location
tomm34 LOC106582656 coding upstream 8227 33801778 ~ 33807479 (+)
LOC118965285 NA coding upstream 15978 33774881 ~ 33799728 (+)
si:dkey-43k4.5 LOC106582653 coding upstream 161160 33650637 ~ 33654546 (+)
LOC110528946 LOC106582609 coding upstream 191231 33623237 ~ 33624475 (+)
LOC110528945 LOC106582597 coding upstream 198425 33616189 ~ 33617281 (+)
rims4 rims4 coding downstream 48201 33884249 ~ 33944568 (+)
LOC110517647 pcdh9 coding downstream 695928 34531976 ~ 35053552 (+)
LOC118965286 NA coding downstream 890353 34726401 ~ 34728810 (+)
LOC118965354 NA coding downstream 2170363 36006411 ~ 36024368 (+)
LOC110527683 LOC106582660 coding downstream 2634268 36470316 ~ 36536037 (+)
G599474 NA non-coding upstream 26792 33788517 ~ 33788914 (+)
G599473 NA non-coding upstream 27734 33787701 ~ 33787972 (+)
G599429 NA non-coding upstream 66566 33746035 ~ 33749140 (+)
G599328 NA non-coding upstream 138492 33676203 ~ 33677214 (+)
G599326 NA non-coding upstream 140560 33674773 ~ 33675146 (+)
G599504 NA non-coding downstream 22578 33858626 ~ 33859090 (+)
G599506 NA non-coding downstream 24078 33860126 ~ 33860483 (+)
G599521 NA non-coding downstream 45912 33881960 ~ 33882217 (+)
G599551 NA non-coding downstream 115840 33951888 ~ 33952990 (+)
G600014 NA non-coding downstream 131253 33967301 ~ 33967515 (+)
G599123 NA other upstream 520178 33290526 ~ 33295528 (+)
G599004 NA other upstream 579070 33235813 ~ 33236636 (+)
LOC110531742 LOC106594194 other upstream 1805776 32007023 ~ 32013203 (+)
G596297 NA other upstream 2733416 31081721 ~ 31082290 (+)
G596168 NA other upstream 2911819 30903179 ~ 30903887 (+)
G600013 NA other downstream 130241 33966289 ~ 33966755 (+)
G600431 NA other downstream 923299 34759347 ~ 34759658 (+)
G600531 NA other downstream 1135080 34971128 ~ 34971405 (+)
LOC110527686 LOC106582662 other downstream 2737839 36573811 ~ 36582978 (+)
G602295 gli1 other downstream 3253576 37089624 ~ 37090756 (+)

Expression


Co-expression Network