G627563


Basic Information

Item Value
gene id G627563
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 57289451 ~ 57298281 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU713580
atgtagtctcttatggtcaatcttccaatgatatgcctacaaatacgtcacaatgctgctaagaccttgggcgaacgacagaaagtgtaggctcattccttgcgcaatcacagccatataaggagacaatggaaaacagagcttcagaaattctgctaatttcctggttgatgcatcatcttgttttcgcctgtagaatgagttctggggcacttacagacaaaatctttgcagattctgaaacttcagagtgttttctttccaaaactgtcaagaatatgcatagtcgagcatcttttcgtgacaaaatatcgcgcttaaaacgggaacgttttttatccaaaaatgaaatagcgcccctagagatctaacaggttaaagaACAAccaccacctgagccactgcctgttcaccctgctaccatccagaaggagaagtcagtacaggtgcatcaaagttgggaccaagagactgaaaaacagcttctctctcaagaacatcagactgttaaatagccatctctagccagcttccacccggttacgtaaccctgcacctagaggctgctgccccatatacagctgaagtcggaagttaacatacacttaggttggagtaaaaaataaactcattttttcaaccactccacaaatttcttgttaacaaactatagttttggcaagtcgggtaggacatctactatgtgcatgacacaagtcattttttcaacaattgtttacagacagattatttcactatcacaattccagtgggtcagaatttcacatacactatgttgactgtgcctttaaacagcttggaaaattccagagaatggtgtcatggcttaagaagcctctgataggctaattgccataatttgagtcaattggaggtacacccacaggtacatttcaaggcctaccttcaaactcaatgcctctttgcttgacatcatggaaaatcaaaagaaatcagccaatacctcagaaaaaaaattgtagacctccacaagcctggttcatccttgggagcaatttccaaagacctgaaggtaccacgttccatgtgtacaaacaatagtacgcaagtataaacaccatgggaccacacagcggtcataccgctcaggaaggagacgcgttctgtccactagagattaacgtactttggtgcgaaaagtgcaaatcaatcccagaacagcagcaggggatcttgtgaagatgctggagaaaacaggcacaaaagtatcagtaaaacgagtcctatatcgacataacctgaaaggctgctcagcaaggaagaagccactgctcgaggggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagccagactacggtttgcaactgcacatggggacaaagattgtactttttggagaaatgtcccatggtctgatgaaacaaaaatataactgtttggccataatgaccatcgttatgtttggaggaaaaagggggaggcttgcatgccaaaaaaacaccatctcaaccgttaAGCACGGgctagcagcatcatgttgtgggggtgctttgctgcaggagggactggtgcacttcacaaaatagatggcatcatgaggtaggaaaattgtggatatattgaagcaacatctcaagacatcagttaacatctctaggatagggggcagcatttggaattttggatgaaaagcatgcccaaattcaactgcctgctactcatccccagaagataagattgCATATTattagaaaacactgaagtttctaaaactgtttgaatcatgtctgagtataacagaacttatttggcaggtgaaacccgaggacaaaccattcagattttgtttttgttttgaggtcactctcttttcaatgggaatccagatttctaagggaccttcttgcagttcctaccgcttccactagatgtcaacagtctatagaaattggttgaggtttttcctttgtgtaatgaagtaaCACTGAACG

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU713580 True 2003 lncRNA 0.41 2 57289451 57298281

Neighbor

gene id symbol gene type direction distance location
LOC110528040 NA coding downstream 229924 57052191 ~ 57059527 (-)
phf13 LOC106583125 coding downstream 242988 57036803 ~ 57046463 (-)
LOC110528035 LOC106583131 coding downstream 272175 56881331 ~ 57017276 (-)
vamp3 vamp3 coding downstream 419844 56853567 ~ 56869607 (-)
psma5 psma5 coding downstream 483438 56796848 ~ 56806013 (-)
LOC110528043 LOC106583121 coding upstream 107466 57405747 ~ 57441999 (-)
LOC110528045 LOC106583117 coding upstream 163639 57461920 ~ 57541619 (-)
LOC118965302 NA coding upstream 220947 57519228 ~ 57523173 (-)
klhdc8a LOC106583114 coding upstream 235996 57534277 ~ 57565272 (-)
LOC110528047 NA coding upstream 280764 57579045 ~ 57602101 (-)
G627555 NA non-coding downstream 51461 57237588 ~ 57237990 (-)
G627505 NA non-coding downstream 87820 57144394 ~ 57201631 (-)
G627477 NA non-coding downstream 172404 57116290 ~ 57117047 (-)
G627617 NA non-coding upstream 54800 57353081 ~ 57353669 (-)
G627714 NA non-coding upstream 216527 57514808 ~ 57517147 (-)
G627835 NA non-coding upstream 412206 57710487 ~ 57710845 (-)
G627323 NA other downstream 437150 56846962 ~ 56852301 (-)
G627314 NA other downstream 454359 56834350 ~ 56835092 (-)
G627254 NA other downstream 593360 56691323 ~ 56696091 (-)
G628575 LOC106579815 other upstream 573769 57872050 ~ 57873331 (-)
G628714 NA other upstream 818909 58117190 ~ 58118122 (-)
LOC110528069 LOC106583062 other upstream 1127894 58425680 ~ 58437154 (-)
LOC110528083 LOC106583085 other upstream 1393536 58691817 ~ 58695856 (-)
sfrs3 sfrs3 other upstream 1409291 58707572 ~ 58713630 (-)

Expression


Co-expression Network