XLOC_002576 (ubxn8)


Basic Information

Item Value
gene id XLOC_002576
gene name ubxn8
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 7623698 ~ 7636340 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004791
TCTACAGTGTTGTGATTATTTGTGAATGCTGACATGTCTAACAGATGTGTTGTCCTCTGTGTTTTACTGTCAGGAGTTTGCTTCATTTCGTGGAAACACTCGATAATCGGTGTTAACGATGCTCTGAAATTGGCTGGACGCGGATTCATATTTCTAGGCATCTGTACATGGCTGATTTCCATATTCCCGAGGCTGAAATTTTTCTTCTTTCCAGTGACTCAAGAGCTCACAGACAGCCCAACACCTGAATCCAGCAGACTGAAAGAAGAGCAAGTTAGAAGAACTCAGCAAGATCTACAAAATGACAAGATGTCGGACTATGCTGAAAAGGTGCTAAAGCCAAGACAGGACTCATTACTCCAGCAGAAAACAGAACGATACTATCGTATGACAGGAGAAACATGGAAACTAAGCCCGGGGCTTCCTGTCGGGGGTGATGAGGATAAGATATGTCATGCGGTGGATGTAGACGAGTCTCCTAATCAGGGAGCCAGAAGGAGACGAAAGCCGATGCAGACTGTTACTCAAGATCCTGTCCAAGAGGAAGTGCCCAAGCAGAAGAGGGTCATAGTTTTGCCTGACGAGCCATCAGTGGACACTGAAGGGGCAGTAAAAATAGCCCTAAGATGTCCGGGCAGAAGAGCAATCCACAGGAGATTCCTCAAAACCTGGAGCTCTCAGCTCCTGCTGGAGTGGATGATGAAGACAGGATACCCTCCAGCCCTCTACACGCTGTACATGTCATACCCCAGGACGGAAGTGCAGACGGCTGCAGACATGAGCCTGGAGGAGGCTGGcatccacacagacacactgCTGAATGTGGAGGAGAAGGAGCCACTCCATGACTAACCACACTACTGCTCGCTTTCATGGAGCAGCGGACATCAATATAAGGGCTTTAATATTTTATACGAGCCCTCAGGACTCTCTCTACAGGTGCCAAATTTACAGCTTTGGGGGGAAATgaagagaccacttgaaaatcCCTTTTTTTGCCGGATTTATTTGGTAAAGTGAGTcaattagttttattatatataaatgctataagtgacatttttattaataatttggaAGAAATATCATCAgtagtttaataaaacaaaaaagttggaTTTGCTGGATTGTTAGGTAAAATCAGTCTAGTGTTTTAAGTAAATGCTATAAAggacttttaattattaatttggaATAAATATCAGTTTACTGTAAAGAAA
>TCONS_00004792
ATTTGTGAATGCTGACATGTCTAACAGATGTGTTGTCCTCTGTGTTTTACTGTCAGGAGTTTGCTTCATTTCGTGGAAACACTCGATAATCGGTGTTAACGATGCTCTGAAATTGGCTGGACGCGGATTCATATTTCTAGGCATCTGTACATGGCTGATTTCCATATTCCCGAGGCTGAAATTTTTCTTCTTTCCAGTGACTCAAGAGCTCACAGACATTTGTCTTTTTTGCAGGCCCAACACCTGAATCCAGCAGACTGAAAGAAGAGCAAGTTAGAAGAACTCAGCAAGATCTACAAAATGACAAGATGTCGGACTATGCTGAAAAGGTGCTAAAGCCAAGACAGGACTCATTACTCCAGCAGAAAACAGAACGATACTATCGTATGACAGGAGAAACATGGAAACTAAGCCCGGGGCTTCCTGTCGGGGGTGATGAGGATAAGATATGTCATGCGGTGGATGTAGACGAGTCTCCTAATCAGGGAGCCAGAAGGAGACGAAAGCCGATGCAGACTGTTACTCAAGATCCTGTCCAAGAGGAAGTGCCCAAGCAGAAGAGGGTCATAGTTTTGCCTGACGAGCCATCAGTGGACACTGAAGGGGCAGTAAAAATAGCCCTAAGATGTCCGGGCAGAAGAGCAATCCACAGGAGATTCCTCAAAACCTGGAGCTCTCAGCTCCTGCTGGAGTGGATGATGAAGACAGGATACCCTCCAGCCCTCTACACGCTGTACATGTCATACCCCAGGACGGAAGTGCAGACGGCTGCAGACATGAGCCTGGAGGAGGCTGGcatccacacagacacactgCTGAATGTGGAGGA

Function

symbol description
ubxn8 Predicted to act upstream of or within ubiquitin-dependent ERAD pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human UBXN8 (UBX domain protein 8).

GO:

id name namespace
GO:0030433 ubiquitin-dependent ERAD pathway biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04141 Protein processing in endoplasmic reticulum

ZFIN:

id description
ZDB-GENE-050522-266 Predicted to act upstream of or within ubiquitin-dependent ERAD pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human UBXN8 (UBX domain protein 8).

Ensembl:

ensembl_id ENSDARG00000098902

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004791 False 1220 mRNA 0.43 8 7623698 7636340
TCONS_00004792 True 829 lncRNA 0.48 8 7624088 7636323

Neighbor

gene id symbol gene type direction distance location
XLOC_002574 wrn coding downstream 68038 7483545 ~ 7555660 (-)
XLOC_002575 BX537303.2 coding downstream 111575 7512008 ~ 7512123 (-)
XLOC_002573 nrg1 coding downstream 151339 7284121 ~ 7472359 (-)
XLOC_002572 NA coding downstream 369800 7238244 ~ 7253898 (-)
XLOC_002571 NA coding downstream 562161 7050325 ~ 7061537 (-)
XLOC_002577 pcyox1 coding upstream 16844 7653184 ~ 7671219 (-)
XLOC_002578 gmcl1 coding upstream 37106 7673446 ~ 7702029 (-)
XLOC_002579 snx24 coding upstream 90941 7727281 ~ 7734939 (-)
XLOC_002580 loxa coding upstream 102200 7738540 ~ 7756876 (-)
XLOC_002581 si:ch73-340n8.4 coding upstream 133474 7769814 ~ 7772434 (-)
XLOC_002570 CABZ01061993.1 non-coding downstream 614208 7009374 ~ 7009490 (-)
XLOC_002566 BX511100.4 non-coding downstream 896584 6725657 ~ 6727114 (-)
XLOC_002585 BX294661.1 non-coding upstream 234287 7870627 ~ 7892684 (-)
XLOC_002586 NA non-coding upstream 247413 7883753 ~ 7886040 (-)
XLOC_002590 NA non-coding upstream 344779 7981119 ~ 7983744 (-)
XLOC_002602 NA non-coding upstream 982378 8618718 ~ 8621543 (-)
XLOC_002603 NA non-coding upstream 1002581 8638921 ~ 8657677 (-)

Expression


Co-expression Network