XLOC_002602


Basic Information

Item Value
gene id XLOC_002602
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 8618718 ~ 8621543 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005997
CATGGTGTAGCCTATTTAGGGAGTACACAGTGTATTTAGGCAATACTCAAAGACTTGTTAAACCAGACAACGAGAACACTAATTACATGTTGTAAATGACAGCAAAGTTGAAGAAAATCTCTCCAAAATAGTATCGACGCGGTATACAAACaacataacaacaaaacatctagACGAAAGATTAAAGACCCAATCAAACAGTCGCAGCAAAAAGTTAAACAGGAGACGCGCCACGAACTGATAAACAGCCGACAGAAAGAGAGACGCAATCACCGACTGACCGCGGCGAGGGCTCGAAACAGGTGTGGCGGTCTTCAGGGGTCTTTTACGGCACCCCACCCGCGCTTCATTGACCCACACTAAAAAGACTTTCCAACTCATTGACACCAAGTTGCTGAGCACCAGGGACGGGACAATGAACGAGTTCACACCTTCCGGCAGTCACAAGAACACCCTCCTTCAGCCTGCCAGCGTATTGAAGGATCAGGAGTGTGGACAACATCCGTATGGTCTTCCTGGAAACTGTGAGGAAGCTCATTATATTGCCAAACATCCCAGGTTACTCTGAGCCTCTTCCTGTTTCTGTTGTCCTGCCATGACCCAGAACACACCAGAAGACACTTATCGATTACTTTCTGTCCTCTGTCAAACATACAGATTCTCTGAGGAGTTCAAAAATGTTCAAGCTGCTGTTAGACGTTGCTTTAAGAACATCCAGGGTAAACTTTGACTCAAATTTAGGTAaattatggacaaacccaaacctTGTGctaaatttgtaattaaattgttTGGATTTGtcaatattttactagaatttGGGCTGAAATAATTCTGCTTTTTTAGTGTAGAAAgcaatgttattattgttaagcatttttaaatgagtttttatttcaatactagTTTGACGTTTCAGTTTAGCTTTGGTTTGTTTCAGTATTGCTTTACTTTTTCCattaatgattttcttttttgttttttatacttgGTTTCGCTTTTAGTTTTTGTAATTATAGTTTAGCCGTTAACTTAATATGTCTAGTGTCCACCAAATATTTCCATCTTACATTTAACGCTTGTGCAAGcatcttaataaaaataaaagtgaaatggcTTCTTTATAGTTAAAATCATTCATGATGTTAAACATGCCTAATTTAAAACTTCATGCTAAATTCAGAAACAGAGCACAGTAATGAACTGCAgattatttatttctaataagtGTTTCAACTTAAAAAGAGCT
>TCONS_00004846
CACCGACTGACCGCGGCGAGGGCTCGAAACAGGTGTGGCGGTCTTCAGGGGTCTTTTACGGCACCCCACCCGCGCTTCATTGACCCACACTAAAAAGACTTTCCAACTCATTGACACCAAGTTGCTGAGCACCAGGGACGGGACAATGAACGAGTTCACACCTTCCGGCAGTCACAAGAACACCCTCCTTCAGCCTGCCAGCGTATTGAAGGTGTggatgtttgttttaaataagtttCATCTAAAGTTTCTAGCCAGAATCTTACTTGCATGGAAATGCAATTAGAACAGGCTTGGGATGGTTTGAAAATCGCAGGATCAGGAGTGTGGACAACATCCGTATGGTCTTCCTGGAAACTGTGAGGAAGCTCATTATATTGCCAAACATCCCAGGTTACTCTGAGCCTCTTCCTGTTTCTGTTGTCCTGCCATGACCCAGAACACACCAGAAGACACTTATCGATTACTTTCTGTCCTCTGTCAAACATACAGATTCTCTGAGGAGTTCAAAAATGTTCAAGCTGCTGTTAGACGTTGCTTTAAGAACATCCAGGGTAAACTTTGACTCAAATTTAGGTAaattatggacaaacccaaacctTGTGctaaatttgtaattaaattgttTGGATTTGtcaatattttactagaatttGGGCTGAAATAATTCTGCTTTTTTAGTGTAGAAAgcaatgttattattgttaagcatttttaaatgagtttttatttcaatactagTTTGACGTTTCAGTTTAGCTTTGGTTTGTTTCAGTATTGCTTTACTTTTTCCattaatgattttcttttttgttttttatacttgGTTTCGCTTTTAGTTTTTGTAATTATAGTTTAGCCGTTAACTTAATATGTCTAGTGTCCACCAAATATTTCCATCTTACATTTAACGCTTGTGCAAGcatcttaataaaaataaaagtgaaatggcT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000095081

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005997 False 1249 lncRNA 0.38 3 8618718 8621543
TCONS_00004846 True 953 lncRNA 0.39 2 8618849 8621273

Neighbor

gene id symbol gene type direction distance location
XLOC_002601 tctn1 coding downstream 183902 8416117 ~ 8434816 (-)
XLOC_002600 csgalnact1a coding downstream 260322 8298984 ~ 8358396 (-)
XLOC_002599 plpp1a coding downstream 323376 8265972 ~ 8295342 (-)
XLOC_002598 dhx29 coding downstream 421669 8154874 ~ 8197049 (-)
XLOC_002597 CU633857.1 coding downstream 465675 8146348 ~ 8153043 (-)
XLOC_002603 NA coding upstream 17378 8638921 ~ 8657677 (-)
XLOC_002604 GOLPH3 coding upstream 39111 8660654 ~ 8672820 (-)
XLOC_002605 BX571955.1 coding upstream 54347 8675890 ~ 8677828 (-)
XLOC_002606 NA coding upstream 220155 8841698 ~ 8858568 (-)
XLOC_002607 mocs2 coding upstream 325685 8947228 ~ 8957480 (-)
XLOC_002590 NA non-coding downstream 634974 7981119 ~ 7983744 (-)
XLOC_002585 BX294661.1 non-coding downstream 726034 7870627 ~ 7892684 (-)
XLOC_002586 NA non-coding downstream 732678 7883753 ~ 7886040 (-)
XLOC_002575 BX537303.2 non-coding downstream 1106595 7512008 ~ 7512123 (-)
XLOC_002572 NA non-coding downstream 1364820 7238244 ~ 7253898 (-)
XLOC_002609 CU694950.1 non-coding upstream 395178 9016721 ~ 9016837 (-)
XLOC_002611 BX323017.1 non-coding upstream 520022 9141565 ~ 9141679 (-)

Expression


Co-expression Network