XLOC_002633 (plac8.2)


Basic Information

Item Value
gene id XLOC_002633
gene name plac8.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 11371961 ~ 11376491 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004897
GTGTAGAGAATTTGAGAATAGCCCAACTCAACAACACGAAAGGTCATGGAGGTGACATCTCAACCCGCTGCATTTGGACCTCAAGAGTTTCAGACCGGATTAATGAGCTGCTGTGAAGACATGAGCATTTGTTGTTGTGGCCTTTTCTGTCTCCCATGTATGGGCTGCTCCATTGCCAGTGACATGAACGAGTGCTGCTTATGTGGTTTAGGCATGCCAATGAGGAGTGTATACAGAACTAAATACAACATACAGggtTCGATGTGTACTGACTTTTGTATCGTTTACAACTGCATGCCTTGTGCAGCCTGCCAGTTGAAGAGAGACATCGAAATTAGGAAGCGCTTAGGACAGTTCTGAGAAAACTTTTTTCAAAGATTCAAAAGCAGTGAACAGAGTTGGTCTGCTTTTTAAAGGCAACAGAGAAAAATGCTTTTAAGCAGTCTATCTACAATACACTAGTGTCTAATATCTAAAGACTAAGATGTGGTATAAGCAAATAGATACGCTAATCAAACTTTATGGCTTCATTCAGTATGAAAGTACAGGCTGTTGGTATTAGACTGATAACAGACATCATGTTTCTCATAACATCCAGCTGTATTTTATGATATAGGTGCAATAATGTAGAGAGCTAATTAACATGTTGGTTGCTGTGTTCTTGCAATTAATTTATTACTAATTTGCATCATGTCAATGAATGTCAGGTTCTTGGTAgtcatttatttataacaacattaCTTTGTAAATATGCTTTTTTATCATTTGTAAATGTAGTAAAGTTACTAGCTATAAAGTCttccaatgcaaaaaataaaacagaaatt
>TCONS_00004898
ATGGAGGTGACATCTCAACCCGCTGCATTTGGACCTCAAGAGTTTCAGACCGGATTAATGAGCTGCTGTGAAGACATGAGCATTTGTTGTTGTGGCCTTTTCTGTCTCCCATGTATGGGCTGCTCCATTGCCAGTGACATGAACGAGTGCTGCTTATGTGGTTTAGGCATGCCAATGAGGAGTGTATACAGAACTAAATACAACATACAGggtTCGATGTGTACTGACTTTTGTATCGTTTACAACTGCATGCCTTGTGCAGCCTGCCAGTTGAAGAGAGACATCGAAATTAGGAAGCGCTTAGGACAGTTCTGA

Function

symbol description
plac8.2 Predicted to be involved in positive regulation of transcription by RNA polymerase II. Orthologous to human PLAC8 (placenta associated 8).

GO:

id name namespace
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070424-12 Predicted to be involved in positive regulation of transcription by RNA polymerase II. Orthologous to human PLAC8 (placenta associated 8).

Ensembl:

ensembl_id ENSDARG00000094438

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004897 False 827 mRNA 0.37 4 11371961 11376491
TCONS_00004898 True 315 mRNA 0.46 3 11372428 11376010

Neighbor

gene id symbol gene type direction distance location
XLOC_002632 lin54 coding downstream 18492 11324515 ~ 11353469 (-)
XLOC_002631 inip coding downstream 48827 11319971 ~ 11323134 (-)
XLOC_002630 ptbp3 coding downstream 110396 11146321 ~ 11261565 (-)
XLOC_002629 ak3 coding downstream 359961 11000894 ~ 11012000 (-)
XLOC_002628 exd3 coding downstream 402365 10879537 ~ 10969596 (-)
XLOC_002634 plac8.1 coding upstream 5874 11382365 ~ 11385155 (-)
XLOC_002635 srek1ip1 coding upstream 18037 11394528 ~ 11397590 (-)
XLOC_002636 adamts6 coding upstream 217507 11593998 ~ 11764439 (-)
XLOC_002637 trim23 coding upstream 414390 11790881 ~ 11840353 (-)
XLOC_002638 NA coding upstream 518882 11895373 ~ 11898575 (-)
XLOC_002626 NA non-coding downstream 584312 10784334 ~ 10787649 (-)
XLOC_002625 NA non-coding downstream 657734 10712178 ~ 10714227 (-)
XLOC_002623 BX323065.1 non-coding downstream 1039534 10319308 ~ 10332427 (-)
XLOC_002621 NA non-coding downstream 1083278 10261345 ~ 10288683 (-)
XLOC_002642 NA non-coding upstream 1922348 13298839 ~ 13301973 (-)
XLOC_002643 CR759894.1 non-coding upstream 1928574 13305065 ~ 13305183 (-)
XLOC_002646 BX293994.2 non-coding upstream 2230536 13607027 ~ 13607143 (-)
XLOC_002647 BX293994.1 non-coding upstream 2235642 13612133 ~ 13612248 (-)

Expression


Co-expression Network