LOC110532969



Basic Information


Item Value
gene id LOC110532969
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 20166595 ~ 20173950 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>LOC110532969
ATGAGCAAATTCCTGGAGCTCAGGGTACCTCTGAAGAACCTGGTGCATAAGGGGGTGAAGGTGGAGCTGGGCCTGCCCTATGAAGTCTGGGACAAACCCTAGGTGGAGGTGTCCAACATGAAGAAACAGGTACACACCCGTGTatgtaccaCCCTACTGGAGCAGCATGAGGAGGTTGTTGAGGACTGGTACCTCCACCATCTGGAGGAGAGGCTGAACACTTCCTGTGTGAGATGCACGTCCTCAAGACCTACGAGCAAGAATGTCTACGGGAGGTTTGGAAGGGTGACATGGGAACGAAGGGATTGAATGAGGAGATAGCAAgcaaaggagagggaggaggaaagacagATGATGCAGGAGAACTGTGA

Function


NR:

description
protein canopy 4 precursor

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
LOC110532969 True 371 mRNA 0.53 4 20166595 20173950

Neighbor


gene id symbol gene type direction distance location
LOC110531706 naa38 coding upstream 84511 20079382 ~ 20082084 (+)
LOC110531703 LOC106577651 coding upstream 146166 20009183 ~ 20090543 (+)
LOC110533004 NA coding upstream 220073 19942675 ~ 19946522 (+)
LOC110531699 LOC106577657 coding upstream 227393 19920323 ~ 19939202 (+)
LOC110531697 NA coding upstream 252457 19876221 ~ 19914138 (+)
LOC110531712 LOC106577641 coding downstream 12777 20186727 ~ 20254184 (+)
LOC110532972 LOC106577640 coding downstream 65807 20239757 ~ 20247172 (+)
LOC110531716 LOC106577637 coding downstream 106124 20280074 ~ 20282985 (+)
si:ch73-335l21.4 rn182 coding downstream 160553 20334503 ~ 20336164 (+)
LOC110531718 LOC106577634 coding downstream 162471 20336421 ~ 20341732 (+)
G779352 NA non-coding upstream 21760 20138277 ~ 20144835 (+)
G779351 NA non-coding upstream 28478 20135564 ~ 20138117 (+)
G779350 NA non-coding upstream 31784 20134374 ~ 20134811 (+)
G779344 NA non-coding upstream 42247 20124035 ~ 20124348 (+)
G779342 NA non-coding upstream 43675 20122720 ~ 20122920 (+)
G779404 NA non-coding downstream 32676 20206626 ~ 20206840 (+)
G779405 NA non-coding downstream 33111 20207061 ~ 20207283 (+)
G779407 LOC106577639 non-coding downstream 45093 20219043 ~ 20223327 (+)
G779446 NA non-coding downstream 127805 20301755 ~ 20303563 (+)
G779291 chd3 other upstream 126312 20039611 ~ 20040283 (+)
LOC110531694 LOC106577663 other upstream 341989 19817663 ~ 19824606 (+)
G779964 NA other downstream 927629 21101579 ~ 21102271 (+)
G783405 LOC106577615 other downstream 2870057 23044007 ~ 23067530 (+)
gba3 LOC106577614 other downstream 2931521 23105173 ~ 23111380 (+)
LOC110531760 LOC106577603 other downstream 3591755 23765275 ~ 23780276 (+)
LOC110531761 LOC106577604 other downstream 3628636 23802151 ~ 23804811 (+)

Expression



Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00014818 NA coding CM030128.1 CM030128.1 32650176 ~ 32653420 (-)