LOC110532026 (LOC106571943)


Basic Information

Item Value
gene id LOC110532026
gene name LOC106571943
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 39375368 ~ 39383225 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615615.2
TTCAGCAGTGTCATAACTCGGCGCATACCGCTGGCAGCAAGCTCCATCGAAGGTGTACTTACTGTACAGCATCCCGGCGGAATGCACTGATAACTCACAGAGGATTTACACGTGTTTTTATTTCGCATATCAATTTATTGTGTTCGTCAACCAAATCGTATTCACAATGAAGGAAAGGAGACTTACCCAGCCTCTGGTGGCGAGATGTAAACTGGTGTTGGTTGGGGATGTTCAATGCGGAAAAACGGCGATGTTGCAAGTCCTTGCCAAGGATTCCTATCCTGAGACCTATGTTCCAACAGTATTTGAGAACTACACAGCGTGTCTGGAGCTGGAGGAGCAGCGCGTAGAGCTCAGTCTCTGGGACACGTCAGGCTCTCCGTACTACGATAACGTCAGACCCCTGTGCTACAGCGACTCAGACGCTGTGCTCCTCTGTTTCGACATCAGCCGCCCAGACTCATTTGACGGTGCACTGAAAAAGTGGAAGACAGAGATCCTGGATTTCTGCCCCAGCACACGCATCCTCCTGATAGGCTGTAAAACAGACCTGCGCATGGACGTGTGCACGCTTATGGAGCTGTCCAATCAGAAGCAGACACCCATCTCACATGAGCAAGGGTCCTCCATGGCCAAGCAACTAGGTGCGGAGGCCTACCTGGAGTGTTCAGCCTTCACCTCAGAGAAGAGCATCCACAGTGTGTTCCGTACTGCAGCCCTGGCCTGCATCAACAagctgcagccctccaccaagcCCAGCCCCGCCCGACGCCTCTCCAAGAGACTCCTCTTTCTGCCCGGCAAGtctgacctcctctcctccaccttcgGCAAGGACAAGGCCAAGGGCTGCTCCATCATGTGAGGGAAGGGAGTAGAACCCAGACAGTGGTGGTCAGAGAGGCACTCCATTGACCGGTCCAGCTGATAAAGGGGGgtgtggggtggggaagggaagggaaagtaAGAGGGAAGGAAGGGGTTTCTGTTTAATCCCTCTGGCCTCCCCAAACATCCTCCCCACCCCCACTGACGGCCCCCTTTAAAAAAGAATGCTACCCCTCCATGGTTTACTCTGTGTAGTCTATACTGGTCTTCTTCATGACCCCCCCATCCCCCAAAAACACATACACAacagacccacacagacacacacctcaccagCATACTGTAGGTTAGTGCAGACTTCCTTTTATAATGCCAGTGAGAGCGAAATGATATAAGAAAACAACATCAATTGTAAACACAGCATCTCACCTCTTTGTAATGTTGATGTGTGTACCATCCATCATCCTTGCCCTAAATTAAACTTGAAAATGTTAACGTTAAAATGGGGAtctttgctaaaaaaaaaaggaTGAGGTGGCCAACCTCTACCTTCCTGGCAATGAGAGGGAACGGTACCCAGAGTACCCAGTGTGACGCAACTGGGGAGGTTTGAGAGAGTGGGCCTTAAATGAAATTATTTCCATGGCGACCcctacagtattttttttttaggaCATTAAATCTGTCAGCAATGAAACAGGGTCTGGAGGAGGGATATGGCAAGCACACCGCTCTTAAAAGAGGTCGTGGGGAGGATAGACTGAGCGAGTCTGAAGGAGTGCTATGTGACTAAACATTCACACGGGCCATTAACAGTAAGACTGGGGACATGCTGTGCTGAGAGCAGAAGAAAAAGAactgaggatgagagagagacttgtttttTTTTCCTCCTTTAGTCAGCCACTCTCTTCTTCATCTCAAGGTGTTTAACTTCAGACGTTGATGGAGTGGGGTGATATTTATAAGGCCACTTTTACTGTCCAACAGTCTTTGATATTTGATTTAACAGAAGGAGAAGAGTCCCCCCTGGTTCCTCTAAGCCTCATTTGGATCATTCTTAAATCCTCTGACCTTGTGTTTACGTAACACATAAAAGGTCAATAATTCTTCACTATGAGCTTTTAACCGTAGCATTGAAGGAGTCAGGAGCTCACTCACTACGCCTCGAGAAGCTTACCGGTGGCAGGGATAAGCTGATCATGTCATTGTCAACACTGGGTTGAAAGAGAAGTCTCCTTGCTCCACGATTGGTCACCTGAGATGAGACTCTCTGGAGTCGTCATTCTTGTAGTGTGGCTAGTCATGATAGTACAGGATCAGAGCCTTTACAAAGCTGGGTATCTCATTCATACTGTGTGAAGAAGAGCTTAAGAAATGTAGATGGGGTAAAGGGTCCTGGGTGTGGTAAGGGGTGTGGGTGGGATGGGTTGGGTTGTGCCGAAACAGAACTAACAGGCTGGTCCTGTCTGAAGAAAGTtatttttccatttttgttctgCTTTGTATTCAAATCTTTTAAGTATAagttaatttcattttttttgttttcttctaaTTTGAAATCTGCTTTCTGCCCAGTCCTTTTTTAACTGTTTATTGTTCTctgctgtttttgttgttgttgtgcttaCTGACGTCATCTTGTATTAGGAGCTGTCTACGGCTCAGCTAACGGAGGACTTCATGATTTGTTTGGACATATAGAACACTGGAATTTAACATGTTGCTTAGCAACAGTGCGAGCAGGGGCAGGCGTGAGCAGGGGCAGGCGTGAGCAGGGCTGCGGTGACTGGGATGCAGTTCCTGTCTCTGGGAGAAAAGAAAGATGTCTTGTCAACTGGGCTCCTCACCATTACTTTGTAGCACCAGACAGAGACCACTACTAAGGTGACGGCTGGACATTTCAGTAAGTAGAACACTGCTGAAAAATATCTGAAAAAGCTCATTTGAAGCCTCCAGCTCAGTGGCAGGTGTAAGAACAACACAGGGATTTTCAAAAAGCAATGTGAGTACCTTTCCAAACTGAGTTCCAACCAAAACACTATTTTTTTTTAGCAGTGAGTGACGAAGCATGTTGTTGAAACGAAACAAAGCGTTTGGGATATGTAAAATGGCTTGACCTTTGTTTATTAATGAGATACTGTATTGCTCAATGTTGTCATTTTTATCTTTTGACATTTTTAATTTGAACGGACACTGAGATTTCGGTCCGCCCGTTTTCTGTCGGGATCTGAATAAAGTTTGCTTTTGTTCATCATACTCTCA

Function

NR:

description
PREDICTED: rho-related GTP-binding protein Rho6-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07531 RND1; Rho family GTPase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615615.2 True 3096 mRNA 0.47 5 39375368 39383225

Neighbor

gene id symbol gene type direction distance location
LOC110532020 LOC106571937 coding upstream 118742 39240179 ~ 39256626 (+)
LOC110531165 LOC106571934 coding upstream 137960 39111355 ~ 39237408 (+)
LOC110532019 LOC106571933 coding upstream 302983 39064150 ~ 39072385 (+)
LOC110532013 LOC106571930 coding upstream 465650 38886624 ~ 38909718 (+)
LOC110532014 LOC106571929 coding upstream 490721 38868269 ~ 38884647 (+)
ddx23 LOC106571944 coding downstream 17810 39401035 ~ 39411199 (+)
adcy6a LOC106566714 coding downstream 82706 39465931 ~ 39513879 (+)
LOC110532032 NA coding downstream 118028 39501253 ~ 39503641 (+)
g6pd LOC106571947 coding downstream 148234 39531459 ~ 39542666 (+)
spryd4 LOC106571951 coding downstream 256016 39639241 ~ 39640889 (+)
G802195 LOC107737655 non-coding upstream 36174 39337906 ~ 39339194 (+)
G802292 NA non-coding upstream 52531 39322616 ~ 39322837 (+)
G802241 NA non-coding upstream 115399 39258408 ~ 39259969 (+)
G802231 NA non-coding upstream 159005 39215311 ~ 39216363 (+)
G802313 NA non-coding downstream 7073 39390298 ~ 39390539 (+)
G802317 NA non-coding downstream 14653 39397878 ~ 39398093 (+)
G802325 NA non-coding downstream 31500 39414725 ~ 39415718 (+)
G802328 NA non-coding downstream 53141 39436366 ~ 39516038 (+)
G802353 NA non-coding downstream 63858 39447083 ~ 39469432 (+)
G801851 NA other upstream 441500 38932952 ~ 38933868 (+)
G801778 NA other upstream 587014 38788061 ~ 38788354 (+)
G800834 NA other upstream 1303935 38070216 ~ 38071433 (+)
G802324 LOC106571945 other downstream 32650 39415875 ~ 39417460 (+)
G802821 NA other downstream 406432 39789657 ~ 39790402 (+)
G802822 NA other downstream 408692 39791917 ~ 39792333 (+)

Expression


Co-expression Network