Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110532054 |
| gene name | NA |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048573.1 |
| NCBI id | CM023227.2 |
| chromosome length | 79455637 |
| location | 39961471 ~ 39962986 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| unnamed protein product |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021615653.2 | False | 798 | mRNA | 0.40 | 3 | 39961471 | 39962986 |
| TU913676 | True | 369 | lncRNA | 0.47 | 3 | 39961533 | 39962619 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110532052 | LOC106571959 | coding | upstream | 15386 | 39939765 ~ 39946085 (+) |
| LOC110531167 | LOC106571970 | coding | upstream | 87805 | 39865883 ~ 39873666 (+) |
| stac3 | LOC106566701 | coding | upstream | 105532 | 39849751 ~ 39855939 (+) |
| map3k12 | LOC106571953 | coding | upstream | 214392 | 39730948 ~ 39747079 (+) |
| LOC110532038 | LOC100286410 | coding | upstream | 245585 | 39685828 ~ 39715886 (+) |
| LOC110532055 | gnas | coding | downstream | 50110 | 40013096 ~ 40046553 (+) |
| LOC110532057 | LOC106571964 | coding | downstream | 93822 | 40056808 ~ 40063855 (+) |
| LOC110532060 | if2b | coding | downstream | 112866 | 40075852 ~ 40085818 (+) |
| LOC110532058 | LOC105026338 | coding | downstream | 123025 | 40086011 ~ 40090648 (+) |
| LOC110532062 | sfrs6 | coding | downstream | 131696 | 40094682 ~ 40098605 (+) |
| G802925 | NA | non-coding | upstream | 615 | 39960555 ~ 39960856 (+) |
| G802922 | NA | non-coding | upstream | 7001 | 39952422 ~ 39954470 (+) |
| G802920 | NA | non-coding | upstream | 9943 | 39951131 ~ 39951528 (+) |
| G802919 | NA | non-coding | upstream | 10427 | 39950801 ~ 39951044 (+) |
| G802900 | NA | non-coding | upstream | 12365 | 39917139 ~ 39949106 (+) |
| G802945 | NA | non-coding | downstream | 39812 | 40002798 ~ 40003013 (+) |
| G802947 | NA | non-coding | downstream | 41937 | 40004923 ~ 40005149 (+) |
| G802966 | NA | non-coding | downstream | 69376 | 40032362 ~ 40059387 (+) |
| G802967 | NA | non-coding | downstream | 69648 | 40032634 ~ 40059564 (+) |
| G802978 | NA | non-coding | downstream | 104926 | 40067912 ~ 40068425 (+) |
| G802830 | LOC106571955 | other | upstream | 149446 | 39810327 ~ 39812025 (+) |
| G802822 | NA | other | upstream | 169138 | 39791917 ~ 39792333 (+) |
| G802821 | NA | other | upstream | 171069 | 39789657 ~ 39790402 (+) |
| spryd4 | LOC106571951 | other | upstream | 320602 | 39639241 ~ 39640889 (+) |
| adcy6a | LOC106566714 | other | upstream | 487914 | 39465931 ~ 39513879 (+) |
| LOC110532068 | LOC106571971 | other | downstream | 423779 | 40375272 ~ 40393967 (+) |
| G803437 | selenok | other | downstream | 479910 | 40442896 ~ 40449939 (+) |
| G803457 | NA | other | downstream | 504642 | 40467628 ~ 40468002 (+) |
| G803728 | NA | other | downstream | 1057950 | 41020936 ~ 41021502 (+) |
| LOC110532096 | LOC106572259 | other | downstream | 1471898 | 41423598 ~ 41452922 (+) |
