LOC110532057 (LOC106571964)


Basic Information

Item Value
gene id LOC110532057
gene name LOC106571964
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 40056808 ~ 40063855 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615658.2
GGTGGAGCCCCATGGAATACCACCCACTAGGGAATAATGTTACGTCATACAGCCTTAACCAGGAAGTAGGAAAAACAATCGGCGAGAAGAGTGACACCATAGACTGTAGTTAGTCTGAAACGTTTTAAAAGGACATTATTTCCATATAGTTTAGATCCCAGAATGTCCGTGTTTGGGAAGCTGTTCGGCGGTGGGGGGAAAGGAGGGAAAGGGCCGAGTCCACAAGATGCGATTCAGAAACTCCGAGACACAGAGCAGATGTTAGCGAAGAAACAGGACTTTCTAGAGAAAAAGATTGACCAGGAACTCATAACTGCAAAGAAAAACGGCACAAAAAACAAACGAGCGGCCCTGCAGGCCTTGAAAAGGAAGAAGCGGTACGAGAACCAGCTTACCCAGATCGATGGCACATTGTCCACCATCGAGTTCCAGAGGGAGGCGCTGGAAAATGCTAATACCAATACTGAAGTGCTCAAAAACATGGGCTTTGCCGCCAAGGCAATGAAGGCTGCCCATGAAAACATGGACATAGACAAAGTAGATGACTTGATGCAAGACATCACTGAGCAGCAGGAGCTGGCGCAAGAAATCTCAGATGCCATCTCAAAACCTGTAGGCTTTGGAGAGGAGTTTGATGAGGATGAACTCCTGGCAGAGTTGGATGAGCTGGAACAAGAGGAATTGGACAAAAACTTGCTGGAGATCGGCGGGACAGAAGATGCCCATCTACCCAATGTGCCTTCTACTTCATTACCCTCCAGACCAGccAAGGAGGATGAAGACGAGGATGAAATGGATAACTTACAGCGCTGGGCGATGGAGGCCATATAGTTGCATTACTGACACCACCTGCTGTAGAGGGAAAGAAAGGACTTATTGAAATTGGTTGTTTTGTGTCCGAGGAGAACCAACCACTTAAAACTATCACTACAAAGGCCAATGCTGTAGGTTCTGTTTCCCGCCCAAAACTAGAGAAAGGGTACCATGGCCTTGCATGAAAagatgaagtaaaaaaaaaactgtataaAAGCTATAAACAGGATGTTTGAATCAAAATTCTCAATAAGTTTAGCATAATTAACACCCGCTCTTGCATTTGGGCAGTTATTGTAATATCACTTAACTGTTCTGTTGCCTTTGTCTGTGGGATGTTATGAACATCACTGACAAATTTACATTTTAATACATGGGAGTTGCAATGTCTATTTTTCCGACTTAAACATATTTATCGTGTGGCGTAGTGGGTGTGGTCTAGATGTTTTTATTAGTACTTACTGTTTGTTTAATTTCTACCAAAATAGGAAGAAATATGAGCATGCGCTCATGGTAACGTTTAGAATGGTCTATTTTCAGGATTGTTATTCTGAAActtttgttttacattttgacTATTCCAACTCCAAAGCATCCTCACCATGTGACACTTGTGATTTGAAGGAAATATCTAAATCGTTTATATTGTTGCTGGCACAGGTTTTCTTCATGTGCTAAGCATGCAATGAGGCAAATCTTAATACACCACACAGCTTTAGAGAAAGAAACTCCaccctgttctgttgtctcttTTCTGAAAAAGTTTATTTTATGTTGAAAAAGTCTACATATTAACTGCAGCAAAAAATAAGATAATGCTTTGTAATGAATAGATTAGAAGGTAGATATAGTATCAACATTTTGGATTTGAGGATTAGTTAATTTTTTAAGCAATGtattaaaacaaaaatacatagGAAAAAGACAACAAGGATAAGCATGTTTGCATTCCTATGGTTTATTTATCCAGATGAGAACATTATTTGGAAAATCATTAAAGTTTTGGATTATTTTA

Function

NR:

description
charged multivesicular body protein 4c-like

GO: NA

KEGG:

id description
K12194 CHMP4A_B, SNF7, VPS32A_B; charged multivesicular body protein 4A/B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615658.2 True 1828 mRNA 0.40 5 40056808 40063855

Neighbor

gene id symbol gene type direction distance location
LOC110532055 gnas coding upstream 10255 40013096 ~ 40046553 (+)
LOC110532054 NA coding upstream 93822 39961471 ~ 39962986 (+)
LOC110532052 LOC106571959 coding upstream 110723 39939765 ~ 39946085 (+)
LOC110531167 LOC106571970 coding upstream 183142 39865883 ~ 39873666 (+)
stac3 LOC106566701 coding upstream 200869 39849751 ~ 39855939 (+)
LOC110532060 if2b coding downstream 11997 40075852 ~ 40085818 (+)
LOC110532058 LOC105026338 coding downstream 22156 40086011 ~ 40090648 (+)
LOC110532062 sfrs6 coding downstream 30827 40094682 ~ 40098605 (+)
LOC110532061 LOC106571980 coding downstream 34879 40098734 ~ 40109207 (+)
LOC110532064 LOC106571978 coding downstream 56626 40120481 ~ 40135587 (+)
G802947 NA non-coding upstream 51659 40004923 ~ 40005149 (+)
G802945 NA non-coding upstream 53795 40002798 ~ 40003013 (+)
G802925 NA non-coding upstream 95952 39960555 ~ 39960856 (+)
G802922 NA non-coding upstream 102338 39952422 ~ 39954470 (+)
G802978 NA non-coding downstream 4057 40067912 ~ 40068425 (+)
G802981 NA non-coding downstream 7651 40071506 ~ 40071713 (+)
G802996 NA non-coding downstream 51184 40115039 ~ 40115538 (+)
G802997 NA non-coding downstream 52766 40116621 ~ 40116975 (+)
G802998 NA non-coding downstream 53734 40117589 ~ 40117828 (+)
G802830 LOC106571955 other upstream 244783 39810327 ~ 39812025 (+)
G802822 NA other upstream 264475 39791917 ~ 39792333 (+)
G802821 NA other upstream 266406 39789657 ~ 39790402 (+)
spryd4 LOC106571951 other upstream 415939 39639241 ~ 39640889 (+)
adcy6a LOC106566714 other upstream 583251 39465931 ~ 39513879 (+)
LOC110532068 LOC106571971 other downstream 322910 40375272 ~ 40393967 (+)
G803437 selenok other downstream 379041 40442896 ~ 40449939 (+)
G803457 NA other downstream 403773 40467628 ~ 40468002 (+)
G803728 NA other downstream 957081 41020936 ~ 41021502 (+)
LOC110532096 LOC106572259 other downstream 1371029 41423598 ~ 41452922 (+)

Expression


Co-expression Network