G802191


Basic Information

Item Value
gene id G802191
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 39326030 ~ 39384896 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU912864
aaaaataaaaaaaatccactgCAATTCAACATCAATTTAAGTTCTTCAGCCTGTGATAACCTGACAAGTTGACATACACACCAATAACGACGCTTCTATTCATCTCCCCAGACTTACATTTTCTTGACAGTGCAAATATAATTTGGTCATTATACAAGTTTACCATCTCATATCAACAACCCACTCCCCACACAAGGGATATTTTAACTGCCATAACTCTAAACAGATGGAATATTCTTTAGGGTACAAGACAAATCCAGATGTTTACAAAGGCCTAAAACAGATAGGAATGTGTATGCTCTATTCCTGCGTAAATGTGTGATGAATAACTCAACTGCTGTTGGATCGCAAATAGTAATACAGGATTAGTCAAATAACAAAAAGTGGGGAGCAACATATCAAGTCAGATGCCTGTAATGAATTCCAGAACATTTCAAATCTAAATGAACATAACATTGATAAACTGTTTGCGACATAACAGGTGAGGAAGAAAGGGAACATGTAAGCGTAAAGGCTAAGCTACTGAAACACGGAACCGTTTCTCTGATCACTATCTATATGCCACAGGGGAGGGAGGCTCACAAGTGGGAACCAAACAGAAAATGTTCAACTGTTCTGGTACACTGCTCAACTAACTTAACACAGAACCTTGTGGGGGAGGATAAAAGAGATGTTTAATTACTTTTCATTACACTTGACAATCTCTTCACATGTATTGCTTTCTAGGTTGAGGatgactatacagtacatccgtAACAAATCATGAATACTTAATCTAATAATAGTAAAAACAGGACACGCCAAGAGTGCAGCACTGCAAATGGAAGTGGAGACTGCTACTCTGTACAACACTATGCATATCAACCTTAAGTGGACTGATTGGAAATTAGCTCTGGAGCAGAGGCTATGGATTTAAACATGGCTACCGACTCATATCTGTacagatttttttcccccagtcTTCAATTTCAAGATAGTTTGAttcttccttccatccctcttccAGGTTTGAGTTTTTTCATTCCAAATCAGGCATttTTTCATCGTCACTATCTGCAGACTCATCATCATCAGCACCATCTAGATCAGGTAGGTCATCTTCCCCTCCCATGTTGTTCATCATCTCTGAGAAACGATCGAAGTTGCCTAGCTCCTCATCCGAATCGTCCTCC
>TU912866
aaaaataaaaaaaatccactgCAATTCAACATCAATTTAAGTTCTTCAGCCTGTGATAACCTGACAAGTTGACATACACACCAATAACGACGCTTCTATTCATCTCCCCAGACTTACATTTTCTTGACAGTGCAAATATAATTTGGTCATTATACAAGTTTACCATCTCATATCAACAACCCACTCCCCACACAAGGGATATTTTAACTGCCATAACTCTAAACAGATGGAATATTCTTTAGGGTACAAGACAAATCCAGATGTTTACAAAGGCCTAAAACAGATAGGAATGTGTATGCTCTATTCCTGCGTAAATGTGTGATGAATAACTCAACTGCTGTTGGATCGCAAATAGTAATACAGGATTAGTCAAATAACAAAAAGTGGGGAGCAACATATCAAGTCAGATGCCTGTAATGAATTCCAGAACATTTCAAATCTAAATGAACATAACATTGATAAACTGTTTGCGACATAACAGGTGAGGAAGAAAGGGAACATGTAAGCGTAAAGGCTAAGCTACTGAAACACGGAACCGTTTCTCTGATCACTATCTATATGCCACAGGGGAGGGAGGCTCACAAGTGGGAACCAAACAGAAAATGTTCAACTGTTCTGGTACACTGCTCAACTAACTTAACACAGAACCTTGTGGGGGAGGATAAAAGAGATGTTTAATTACTTTTCATTACACTTGACAATCTCTTCACATGTATTGCTTTCTAGGTTGAGGatgactatacagtacatccgtAACAAATCATGAATACTTAATCTAATAATAGTAAAAACAGGACACGCCAAGAGTGCAGCACTGCAAATGGAAGTGGAGACTGCTACTCTGTACAACACTATGCATATCAACCTTAAGTGGACTGATTGGAAATTAGCTCTGGAGCAGAGGCTATGGATTTAAACATGGCTACCGACTCATATCTGTacagatttttttcccccagtcTTCAATTTCAAGATAGTTTGAttcttccttccatccctcttccAGGTTTGAGTTTTTTCATTCCAAATCAGGCATttTTTCATCGTCACTATCTGCAGACTCATCATCATCAGCACCATCTAGATCAGGTAGGTCATCTTCCCCTCCCATGTTGTTCATCATTTTAGCCATTGCTTCTTGTGTGTTGAACGCCATATCCCCATCTCCTACCTCTGAGAAACGATCGAAGTTGCCTAGCTCCTCATCCGAATCGTCCTCC
>TU912867
aaaaataaaaaaaatccactgCAATTCAACATCAATTTAAGTTCTTCAGCCTGTGATAACCTGACAAGTTGACATACACACCAATAACGACGCTTCTATTCATCTCCCCAGACTTACATTTTCTTGACAGTGCAAATATAATTTGGTCATTATACAAGTTTACCATCTCATATCAACAACCCACTCCCCACACAAGGGATATTTTAACTGCCATAACTCTAAACAGATGGAATATTCTTTAGGGTACAAGACAAATCCAGATGTTTACAAAGGCCTAAAACAGATAGGAATGTGTATGCTCTATTCCTGCGTAAATGTGTGATGAATAACTCAACTGCTGTTGGATCGCAAATAGTAATACAGGATTAGTCAAATAACAAAAAGTGGGGAGCAACATATCAAGTCAGATGCCTGTAATGAATTCCAGAACATTTCAAATCTAAATGAACATAACATTGATAAACTGTTTGCGACATAACAGGTGAGGAAGAAAGGGAACATGTAAGCGTAAAGGCTAAGCTACTGAAACACGGAACCGTTTCTCTGATCACTATCTATATGCCACAGGGGAGGGAGGCTCACAAGTGGGAACCAAACAGAAAATGTTCAACTGTTCTGGTACACTGCTCAACTAACTTAACACAGAACCTTGTGGGGGAGGATAAAAGAGATGTTTAATTACTTTTCATTACACTTGACAATCTCTTCACATGTATTGCTTTCTAGGTTGAGGatgactatacagtctctctcttatACAGTCACTCTCTAGCTCAccctcgtctctctctttctctctccgttgctccctcctctcaccctcgtctctctctttctctctccgttgctcccccctctcaccctcgtctctctctttctctctccgttgctccctcctctccccctcgtctctctgtttctctctctgttgctccctcctctcaccctcgtctctctctttctctctctgttgctccctcctctcaccctcttcaCTTAAAGCTGtccttctccccctctgtttTGATATATTTCCTTCTAACGATGTTTGTCCTTCGCTGTGTCTCGGTCTGTGTCCTGTTGTCACTCTCTGTGCCATGATGGAC
>TU912865
CCGCCATTGTGATTGCATAAGTCTCACTGGGAAGTAGGCTACAACTGCAAAGTTTTTTAGGAGATtacatttactgttagattaatacatggaTACTAGCATTGGGTATTAGTTAGCAATCTAGCATTTGAGTTTGTACTTACTCAGGTGGTGAATTGAACCTAGATTAGTGCGTAAAGATTTGTTCAATAGAGATTTATTTGCCAAACAAATCTGAAAActgggttctactaagctaacatgtggacatacagagacttgttccgaagcaactcctgcgttgcttggctgtgtgcttagggtcattctcctgttggatggtgaaccttcgccccagtctgcggtcctgagcaggttttcaccaaagagctctctgtacttttctatGTTCATCTTcgcctcgatcctgactcgtctctCAGTccgtgccgctgaaaaacatgcccacagcataatgctgccaccaccatgcttcaccgtagggatggtgacagtttcctccagacgtgagacTTGGCATTCAGTTCAAACAGTTTAATATTGGTTTCAgcagaccagagagtcttgtttctcatggtctgagagtcttaggTACCGtcttgcaaactccaagcgggctgccatgtaccttttactgaggagtggcttctgtctggccactaccataaaggcctgattggtggtgtgctccttctgaaaggttctcccatctccacataggaactttagagctctgtcagagtgaacatcaggttcttggttcactgaccaaggcccttctccgattgctcagtttggcccggcagccagctctaggatgagtcttggtgggttccaaacttcttccatttaagaatgatggaggccactgtgttcttggggaccttcaatgcagcataatttttttggtacccttctccagatctgtgccatgccatcatggctttgtttttgctctgacatggactgtcaactgtgagaccttatatagacaggtgtgtgccgttCCAAATcacatccaatcaattgaatttaccccaggtggactccaatcaagttgtagaaatatcaaagatgatcaatggaaacaggatgcacctgtgcttaattttaagtctcatagcaaagggtctgaattcttagaAATAAAAACAGTAATACCCATTTTCACTTTTtccattatggggtagtgtgtagattaaaataaggctgtaacgtaacaaaatctggaaaaagccAAAGGgcctgaaaactttccgaaggtACTGTACTTCCATACAGTTCTTAAACTGGTACtagggaccttcagacgagtcttatGAGCCTTATGgttgtcctagagcaaaacaaccacaTGTACGTGTTCGTAGTGTGTCGGCCAAATTGTTTGGACGATACATACAGAAATTGGCATCAGTAGTTGTACTGACCTCAGACAAGTCCCGTGACtccgtgagagtctcatctttccacagaggggtcataatagtttggcCAAACTGAACGATTTGTGATAAGGGCGATTTTCGCAGTGTCACCATGGCAGATGCCGAAGACCGATATTGGCGGATTGAGACGCACCCCACTCAAAAAACATATCTTAAAACAGGGATTAtgatggattttttttcttcgttAATTTGATTTCCACAGGGCCACGGAAATTGTAGAAGGGTTAATAAAGCACTGAATATCTTTATAAAGACGATTACTCATTTTCTCTATTGCATGCCGCCGCAGGAAAAACTGGTGCAACCAAATCATGGGCTGATGCAACCAACTGGAGAAACCTAGTGGCAACAGTGCCACCAGGGGAAATTTGTGTGACTCGCTGATATGACCGTCGCAATTAAGATTTGAACATATTGTGCCTCACACATTCTTCTAAAGGGACTGATCAGTCATTAGCAAGCCCATACACAAGAGGCACATGACATTGTGTTTTTGTACAAAGTCAAGTAAAGTGAAACGGAGAAAAAGAGAATTAACTCCACAGAGTAGCTCTTACATCATCAGCACCATCTAGATCAGGTAGGTCATCTTCCCCTCCCATGTTGTTCATCATCTGCAATCAGAATCACAAAGAACAGTCTGAGCCAAATATCATCATGTTGCCATGTACTCATTTGTACAGTCTTGGCCCAACCGTCCATACAGCAATCAAGAGCAAGTTCACCAGTTGCCCTAGGGCCCTTACTTTAGCCATTGCTTCTTGTGTGTTGAACGCCATATCCCCATCTCCTACCTCTGAGAAACGATCGAAGTTGCCTAGCTCCTCATCCGAATCGTCCTCCCAGTCTTTCCAGTTGTTAAAGTCGACGCTGAGCCAAGTTAGCTGTTGAAGGATAACACGTATGACAAAAAGGCTTGCAGATGCTCGTTTGGAGGTCATCTTCCTGGCTCCTTACATGCATTTAGAATTCAGCGTGTTCCGAAATCAATTATCAACCAATACTTAAGCACAGAATGTTTATTTAACTATATATGGCAAATACATTAGACACTAGAACTGACCTTAGCCTTCTCTTTTGTTAGCCTCGGCCACGGCTTCCCAGGTTCTGCTTTTCGCAAACAGCACAACACTGACCGATCTGTGCGTTTGTGCATGGattcctgtgtgtgtgggtacaaGAGACACGAACACTTTTATTCCGCAAAATAAAGTTCCATTACTTATACCTCATGCAATCTGAGGACAGGGTGACAATGTAATGAAGTGATTGAGTGCCTCACATTTTGATCAATGGCTTCGAAAAGGTCTACTTCATTCTCGTGTTTGACTTGGTCAGTTCCTCCAAGACAACTGGTAAAGGGAGGGGTGAAAAGAATTCAGCATAAATTTGACTTAAAATGGATTCTCCGGTACTTATGTATACTTTTTAACCAGTAGTTATGAAAGTAGCACTCACAAGCCAAAGTGGGCCccgacacatccagcccaaagtggGAGGGTTAAAATATACTTAGTAGTTGCTAAAGTCCCGGAGCACATATTTAAAATGAATTAGAAGGATTTTCAGATGCCTAGAGCAGTTCGGCAAACTTTTTCTTTAAAACTCCATTGACAGATGTCATAACTCACCTGAAAGCAAACTTTGCTTTCTCGAAATTGATCTTGACATCCTTGCTGTCCGCTACGCAGAACTCGATGTAGACAGAGTCCCGTCTGTCATACCACTTAGCAGTCGCTGGATGTCTTGTTGTATGTCAAATGCCGTTGTGATCGCCGTCTCCTTGGGGATACACAATTCAATTTAGAATACTGTCCTTGTGGGGATTTCGTTTCAATGGGCTGTAGAAAAGTGTGCGCGAACTACAGAACTGTGTATTGTATTCTACACACTGCAAGGCCACCCTGTCTTACACCTCGAGGACTCCGAATCAGACCTGACGCTGTGACGCAGCTACCGCG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU912864 False 1172 lncRNA 0.39 4 39326030 39330048
TU912866 False 1220 lncRNA 0.39 4 39326030 39330048
TU912867 False 1106 lncRNA 0.42 2 39326030 39384896
TU912865 True 3412 lncRNA 0.44 2 39327755 39334050

Neighbor

gene id symbol gene type direction distance location
LOC110532020 LOC106571937 coding upstream 69404 39240179 ~ 39256626 (+)
LOC110531165 LOC106571934 coding upstream 88622 39111355 ~ 39237408 (+)
LOC110532019 LOC106571933 coding upstream 253645 39064150 ~ 39072385 (+)
LOC110532013 LOC106571930 coding upstream 416312 38886624 ~ 38909718 (+)
LOC110532014 LOC106571929 coding upstream 441383 38868269 ~ 38884647 (+)
ddx23 LOC106571944 coding downstream 16139 39401035 ~ 39411199 (+)
adcy6a LOC106566714 coding downstream 81035 39465931 ~ 39513879 (+)
LOC110532032 NA coding downstream 116357 39501253 ~ 39503641 (+)
g6pd LOC106571947 coding downstream 146563 39531459 ~ 39542666 (+)
spryd4 LOC106571951 coding downstream 254345 39639241 ~ 39640889 (+)
G802292 NA non-coding upstream 3193 39322616 ~ 39322837 (+)
G802241 NA non-coding upstream 66061 39258408 ~ 39259969 (+)
G802231 NA non-coding upstream 109667 39215311 ~ 39216363 (+)
G802222 NA non-coding upstream 118246 39207537 ~ 39207784 (+)
G802313 NA non-coding downstream 5402 39390298 ~ 39390539 (+)
G802317 NA non-coding downstream 12982 39397878 ~ 39398093 (+)
G802325 NA non-coding downstream 29829 39414725 ~ 39415718 (+)
G802328 NA non-coding downstream 51470 39436366 ~ 39516038 (+)
G802353 NA non-coding downstream 62187 39447083 ~ 39469432 (+)
G801851 NA other upstream 392162 38932952 ~ 38933868 (+)
G801778 NA other upstream 537676 38788061 ~ 38788354 (+)
G800834 NA other upstream 1254597 38070216 ~ 38071433 (+)
G802324 LOC106571945 other downstream 30979 39415875 ~ 39417460 (+)
G802821 NA other downstream 404761 39789657 ~ 39790402 (+)
G802822 NA other downstream 407021 39791917 ~ 39792333 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G250258 NA non-coding NC_047610.1 CM018556.1 6731928 ~ 6738284 (+)