G822360


Basic Information

Item Value
gene id G822360
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 56708563 ~ 56714483 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU935017
GCCTTTATTTCCTATTTGTTTCTTACAGAGCTGGTAACACTTATGATAGATCTGTATTGAGTTATTTGGTTCCCTCGATAACTTTACAAGGATCCTCGATGCTCATCCACTGACGGGCCGTGGGCAGTTTGTATAGGAGCAACGTTTTGTGTCCAGTCAAGGGCTAAAGCATGCGATCCACAGTAGGCACAAGTACTGACATGAACACACGCACCACAACACTAAGACACGAAGAAACACAGCCAGAGGACACGTAATCTCATGGTCCTCTGAGGCTTAAAAAGaggatgaagagaaagagaggagaaaaaagTATTTTCGAATGCAATGTAGTATGGAAAATTAGAAGTGAAGGAAGAGTTCAAGAGAGAGGGTTGGTACTATTCTGCATGTTTTGGtagtatatatatccatgttgtAAACGCGAAGGACGACATTCCTCTGAAAATCAGTATCATTCTGGATCCAAAGGAGCCCCCAGCGAGTCCAGTTCCACAACAACAGCACATTAAAATGCTAAGACAGAAAAACAGTGAATTCATGGTGGAAAAGTTCAATCATTGTCTTTTCCGTTGGTCCTAATGCAGTTTTGCATTctaaatataatacaatagaaacacaACACTAACCTAGTGATTATTACAGTAGAAAGAGGAaacacaaacagagacaggagAACACACTGTAAGGTGGTGAGTGACCTAGGCCAACTGAAACACTCCTTAACACAGTATTGACATGGAAGTTGTATGACTTTTCTGTTatttctctactttctctctctttctgcattgttgggaagggtctGTAAGAAAACATTCCCCTGTAAGTCCACACCTTTTGTtgacgaagcatgtgacaaatccaATTTGCTTTGATATGATGCTCTAGTTTGGAGGGTATCCCTTTGAAAATCACATGGACCTTTTTCATAAAGTACTTGAATAATTCATTTAAAAAGCTTGATAGAAATAAAACAGCTAGTAGTACAAAAGAACAGTAGAATGTAGTGTGTGAATCATCGTGCTCTCAATCCATTGTTCCTTCACCGCTGAGATATAGCCTGCAGTTAGTTTCTAAAGCAGTACTACTTTGCATAAAGTAGATATATCAATTTAGGCTTTCAAAAAATAGGTAATCCTATaatataaacattttaaaccattgtaaataaaaaaacatatttgttaATTATTTTTATCACCACTTAAATGTACACTTAAGAATGGTTTATGTATTCTGGGCATGCAGATATATACGCCTGGTAAGTTGCAGTAGTACTGTGTTTTAGCACTGCAACCTCTAACTTTATAAAGGGCCTATGCTTTTTGTTCTtgtaacatacatacatacatacacacaaacacacagttgtCAGTCGTATTCCCCATATAGAGAACTGTCCAATGACCGTGGCAGTGTAAAAAGCATTGAAACAATCAACTCTTTTTAATAAAAATGTGCTATATTTGAACCTTTAATCACAGTTATTTTATCATCTAAACTGCATCCGCATCAGTGGAATTATTTGGGCTCTGAAATAGATTCAAACAGATTACTGATGATGATTTCATGGAATTGTAAATATAGATGGATATACTGGCAGTATTTTGGAAAGACACTGAAATCGTCAATTGGATTGAAGTTCCATATGTGCATCGGTTTGGTCACAGTTCAAAAGGATTGATTGTGACATTGAGAAGCAACATCAATGATCCCATTATAAAATAGTTGCAAACATCAAACAACACTATGATTATTATTTCAATAGTGTTGCTATTAGAGGAATTGTTGACTTGAAACAGCTGGTTTCCATCAAAGTGTCTAAGATTAGACTGTCGATGATTTATCTTAACTTTACTGTTTACCATGAACACAACATATGTTGATCAGACAATAATGCTGAGACTTGGCACTGTTACAAGATAGATAGATATGTCTGCCGTATCTTTGATCACAATATGATGTCATGTCTGTAAAGCCACTGTGGATGAAAATAGAGGGATCCGTACATCGCAGTCAGGGTCCCAAATGAATTGCACTCAGCCCAAGGATCACCAACAGACGAGCCTGACACTCACATTTCAATAATGTAAATGTTCCGGATGACTTCTTCAGGTATTTTCGATAACATCTTGTGAGATAAGAAGAACCATGATTCATACTATCAAAACAAGGCATATACAAATTACATCACTGGAATACATTAGCTACACATGTATAAAATAAAGACAGCTTTAACATCTTCAAAGTAGAAAACAAAATCACATCCCCTATACTAAACTCACAACTGCTCTCAGTGCTCAATATTTTGCCTCCTAGAATCTAGATGAGTACAGAGTTCTGAACAGAATGTACATGACAAACACTGACCTAGGAAGATTAagaagtgtttttttgtttttgttttttacaaatCAATAACTAGTTATACAGCAGAGCTCTAAAGAGCTAGTGCTTGAGTATTATGGCTTTAGTTTTTATCTAATTCAACTATCTGTATACACATTCACATATATTTGTGTAATTAgcactgtaaaatatatataattgcaAAGGGTGTCAGGTCATTAAACCAACGCAAAGTAAAATTCCCCCCAAAAGGTTTAATGTACAGTAGGGGACTCCAAGCTTTATGTCCAGTGTGGAGATCTGTGGATTCAGTTCTGGTGGCTCATTAGCATCCTAAATAGTAGGCTTGTAATACATGTTTGTCCAAAAATCAGGTTCATCTTTTTTTACAGTCTTTTTAACCAAATGGTGGATATGTTTCAGCAATGGCACTGATCATTGAAGAGTTCCACTTTGGAATAGTTGTATTTCTTGAACTTGGAGGCCCTCTACAATCACTGATGTTTGGCAAGAAGACCAACATAGACTTAAATCATCTCAAAGGAAACAATacgtaaataaatacatttgaaataaatGATAATTAATCCAAATGAAATCACAAGGATTTCGATAGCAAGCATGCGGCTACATTGTTATCCTACATGAACTCACACACAGTACTTGACGACAAACTTGCTTAAAAGTTTAGGCATGGACAGAATCATATtattctaatatattatgacattcTCTCCAATAACCCATtcatggaaaataaatacatatttgttTCATTTAGAAAATATACAGTGTATCTTTTTTCCTGCATTGTGTTACAGTATTAAAATGACAAATGACACCCACGTACACAAATTATTTTTGCTTTATCTCTAAAACATGCTATTCTGTACAGTATTTTGTAGAAACATGCAGTATCAACCTGTATGAACTATGTATATAGGCAAAACTACTCACCGATGGGTCGTTTGATTGCTTGCATTTAGTCTTTTCTTTAGTGTTGTTTTTTGAACATATAGAAGAAACTAAATCAAATGAAACATAAAACATAACTAATCTGACCCCTACTGGACATATACATAAAGATATGGATGTCCTATAGAGAAAAGCAATACATTAACCAACATTCACTACTGTAATTCCCAAAAGTATAAAAGTTGTCAAACTGTTAAAACATTAAACTGCTTTGCTTGTTCTTAAACACAATCGAGTACTTTTTGCCGTCCTTGAAATACGTTGCTTTGAACTATTTTGTTGTTTGGAACAAGATGGTGCACAGAGACAGTTCATGTCCCATTACATTACTAGTGTGGCTCGAAAGTCTAATGGCATTTTGCTACGACtttgacattttttaaatgtcaatTTAATTCAGTCATATGATCAGTTTTATGCTCAAATTTATCTCAAGAGAAAGTCAAAATGTAAAATCACTTATTCAGCAAAGGATCTGAGGAACAGCATTTAATTGAAATGTGTCTTATTCCCAATCAGAAGACTTTTGAATATGTGACCTGACTCAAACTCACGACATCTCATCACAAATACTCCATAGATCAAAGAACAATCTATAACCACGTAACATAGAGATATCCAGTATAGTGCAATTAGATTCAGCAGTTTGGCCATCTGTGTATAACATACACATAACGGGAACCTTCCAGATCTTATCCTTTCAATCAAACTTAACAACAACAATTGTCTCAGAGCAATCAAAGTGCATTCACAAGAAAAACAAGGTTAAAATGATCAAATAAAAACTACAAAAATAATGATTCACTCATAAATTCACTCTCTTGTTTTTTTACCAGAAATGATTCATCATAAAATAAATGGTAAATCTCTGGTTTTTGGAGAGTAGAATTAGAACAGAACATTTTGATTTAAAGTGCTTGAGGAATAAAAGTGTTTGACGTTGAAAAGAAAAGAGTGAGTAAAAAACAACACAGCTAATTGGAAGGCGTCCCTGGTAGTTGAGAATTGCTTATTTCATTACTTGGAAGGCTTGTCTCCTTTATGACTGTAAGACGGATACAGGGATTCCTTTGAATAAGTGACATCCTTGTTGTGAGTCCATGACTAATGGCAGTAGCACTGAACAGGGAGATAGATCCTAAATAGTAGAGGCATTGGAGGGGAAGGTGGTAGATTGCAGGCAGTAGAATAGACACCTGACAAACAACATTGTGTCAACCAGGGTCTAATTCAGTCCTTGGAGTTTCCACacagatattctcacagatatgCTCTCTCTTGCATGCATGTAAGTGTCTATCATGGCCCATGTTGGGAAAGCATGCAAGAGAGAAATATTTGTGTGGAGAAATATCTGTGTGGAAACTCCAAGGACTGAATGTGACCTTCCATTCAGTCCTTGGAGTttccacacatatattatttcTCTTGCATGCTTTCCCAGCATAGGACATGGTAGACACTTACAGTGGCTCATAGTCCCTTTATCCTAAACATATTTCACATCTCTACTCTGTTGACTGACAGCCACAAACGGTGTTATTGAGAGACACTCGAGAGACTCTCCTGTTGCCATTTCAGTGATAAATTTAGACTAGTCTTAGATTATGGAAAAATAAACCAATCCAGCACCAGACTGAGATGTTAAAATCATCAAAAACATTATTCTCTGATCATGTTGCGGAGCATTTTGAATAACAACCCGTTTAGAAAAAAAGGCATGAAGTTTCAGTTTTCTCTCAGTGTACCTGAGAATATGGGTGAGCAGATGAGCTAATGATCAAAAAGGCAGTGTGTTAACAGTGTGGGGTAACTGGATATTGTCTATCTCTACTCTTTACCCAACTCTAGGAATGTAGTTCAAACTAATCGTATCTAGTATGTAGTAAGTAATTAACTGGCAGGTGTGGAGCATGGTGCAACAGTACACCCAAGGAATGAACCTGCTTGTGTTTTTCCTCTATTACATGGCAGTATAAAGCATTTTAAGTATTACGCAGAATTGAAGCAACGGTGTCTCTAAGGGGAGGAGATGAAAAGGTACAAAATGAGTGAATGTGTGGTTTTACTTCCCTAATCCTCCATCACATTGGACCGCTGTTTTCACACTCTAGGCTCCTATCCTCATGACACAATGTAACTAACTGCAACCCCAATACAAACATCAATTGAGTGATCTTGTGACTGTCTCCTTGTGGaatgaatgttttattttttattattttttgatCATGTCAATTGGGATATAGGCAGGTATCTTTTGTGGTATAGGGTGTAGAATTGGTTGGTGTGTTGGTTTGGAATGTATTATTGGGAGATGTGTAGGACCAGGGGTGAGGAGGATGGGTAGGTTTGGGTATGGGTGTTAGTGGGTAGAGGAGGTTTACTTCTTGGCGTTCAGGGCTGCCAGCGAAGCATCAATCTCCTCCTCGGGCTGCAGTGGATGCCACTGGGCGATGGGGCGGCGAGGGTTGGCCAGCATGTCGGACCAGTGCTTCAGCTGGGTGCCAGTCGCCTTGCTGCCCACCCAGATCTTCCCGATTGCGTCGTTTTTACCGATCTTGTCATAATCCAGCACTGTGACCACAGCTTGG

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU935017 True 5921 lncRNA 0.37 1 56708563 56714483

Neighbor

gene id symbol gene type direction distance location
LOC110532437 LOC106572423 coding upstream 236 56661757 ~ 56708327 (+)
LOC110532435 LOC106572422 coding upstream 56479 56645780 ~ 56652084 (+)
LOC110532433 LOC106572420 coding upstream 66580 56590691 ~ 56641983 (+)
LOC110531212 LOC106567287 coding upstream 245016 56246710 ~ 56463547 (+)
LOC110532427 LOC106572343 coding upstream 578150 56125754 ~ 56132936 (+)
LOC110532442 eif4e3 coding downstream 116261 56830744 ~ 56839626 (+)
LOC110532441 LOC106572418 coding downstream 125234 56839717 ~ 56863877 (+)
LOC110532445 LOC106572414 coding downstream 200099 56914582 ~ 56946999 (+)
LOC110532447 lmod3 coding downstream 232995 56947478 ~ 56948805 (+)
LOC110531214 lmod3 coding downstream 234321 56948804 ~ 56950054 (+)
G822354 NA non-coding upstream 53748 56652527 ~ 56654815 (+)
G822291 NA non-coding upstream 129907 56578443 ~ 56578656 (+)
G822274 NA non-coding upstream 142736 56565597 ~ 56565827 (+)
G822270 NA non-coding upstream 144898 56563444 ~ 56563665 (+)
G822362 NA non-coding downstream 2647 56717130 ~ 56718162 (+)
G822361 NA non-coding downstream 7324 56721807 ~ 56729664 (+)
G822379 NA non-coding downstream 17310 56731793 ~ 56732226 (+)
G822381 NA non-coding downstream 20821 56735304 ~ 56735899 (+)
G822382 NA non-coding downstream 23581 56738064 ~ 56738387 (+)
G822283 NA other upstream 135606 56572607 ~ 56572957 (+)
LOC110532426 NA other upstream 584378 56119005 ~ 56124213 (+)
G821409 pacsin1 other upstream 644908 56061706 ~ 56063655 (+)
G821363 uhrf1bp1 other upstream 733247 55974042 ~ 55975316 (+)
G822404 NA other downstream 48142 56762625 ~ 56763540 (+)
LOC110532462 LOC106572392 other downstream 627918 57342345 ~ 57958962 (+)
G823373 NA other downstream 1314136 58028619 ~ 58028857 (+)
G823467 NA other downstream 1490780 58205263 ~ 58244984 (+)
G823459 LOC106572386 other downstream 1532631 58216176 ~ 58250307 (+)

Expression


Co-expression Network