G822361


Basic Information

Item Value
gene id G822361
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 56721807 ~ 56729664 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU935018
CTTGTTGTCCTGGAAGTCGTAATCTATGGAGTACTGAAGCTTCCCGAGCTTTTCTTTctccttcacctcttcctctttctcgtCTCCAGTCATACCAGTCTCAGCATCATcttcatcataatcatcatcgtCCTGTTTCTGGAATGacaagggggaggagggggcagagTGGGCGTCAGACATTTGAACAAATAGTCAAAAACACCTATAGATTCTTCTTCAGCGGTCCAGTTAGTCACAGCAGCCATCTACCTGCCACTTACCCCCTGCTTGCTTACCCAGATGTTACTAGTGCACATCTTTTCATCGATGACCTTGGTTGCAACATGACTTGATTTCACCATTCCTTGAGTGACGCCATTTTGCTTTTGCACTATATATTCACAATTAAttatttactgtatatattcattgACATAACATAGAAAGAGATCGATATACTGAATGTCAAAAGGAAAAAAAGGTCAGTAAAACAGTCAAGATGTAGTCGAGGTTTGCTCCAGGGGTAGCCCCAGACAGGACAAATGTTTTTGTTCTTGCTGCAAATCCGGCCATTTTGACATTGATAAAGGTTTGTGTCAAAGGCTACAGAAATAATACAATGCTTGTATTCTGTTTTCTCCTTGTTGCCGTAACTGCACTCCAACCTCCCAGAAATCGGTTTGCACTATTACTGTCTAAGATTACACCTCCACTGACATAATCATCGTAATTACTTTTAATTACTGAAAAATCGACACCAATCTACAGCAGATATGAGCTAATAACTCCTGCTAATACACATTGCGTGTTACAGACGTATTGTAGAGTATCTCTAGTTATAAGGAACATTTACAAATCCCAGTGTCAGCTCATATGATAATATAATTAGCCAAATAGCTAACCATGACATCGTCGTAGAATTACTGACCCTTTTAAGGGATTTTTTGCCTAACTTCTAATGCATTTCTTTTATATTGTCCtcgacacatactgtacattacccAATAATGTCAATTAGTAGGGCCATGCTATTTATCGCAGAGCTTACCCTGGAAGAGGAACTGGGGCAGACTGCACCTCATTCTATGTTGTATtccattcacacacaaacacagacccaATTACtaacacattcacacagacacactgtattCTACATATTATATTCACCCTTGCATACACAGCCTTACATACTTAATATACCTCACATCTACTGAGCAAACATTTAACCAACAACAAGCACACATaagcacacactcacatgcaaaGGCTCTCGCATGCAGGCTTGCAGAAAAACTCACCCACTCTTCAAACACAcgtgcaaacacaaacacacaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaccatctccttATAGTGGCATTCTGTACATTTGTTGCGGTAAATGCTTTACATTCCAGCATGCCAGGTCAATCAATGCAGGAGAATACAGTAGTCTTTAAATAATGTGAATGAAATGACTCAGCCTTTTTCAGTCTCCTATAGTTTCAATAATGACTCCTGATGTGCATTAAAGTAATGTATCAATGTCAGTAATATTTTTGTTAGTCAAGATTGCGTGCTTTGCAATCCTGAaaaacactcttagaaaaaaaagtgctatctaaaaccttaaagggttcttcagctgtccccataggaggaaCCTTTGAATAACTTTTGGGGATTCCATgtaggttctacctggaacaaaaaagggttctacctggaaacaaaaagggttctcctatggggacagccaaagaacccttttggaaccctttttcctTACAGTGTTCGTGAAAATTGCACATCCATGAGAAGTAATGCTATATAGGAGAGCTCCAGTCTAAATCATACCATACATGCAGTGGGATTCAAAGATTACGGAAAGGTATGTCCAAAagtatgTCCCCATCATCATAACTACGATAACTTTTCATTTGTGAGCTCACATTCTGCAAGGAATTCTGAAATCAAACTGTAGGCAGCCAATTGAAATACCAGGGTTTAGATTTGAATCATGATGTCTAAAGAGAATTCAAATGTGGCTCACATTATTACCAGTAGGCAAACTTTCTGACCCCCATTCTTTTCCACTAACATCACTGCTCCAGGGAGAAAGGGAAATGTTGATTATAACCTAATTGGTCAGCATCATTTTGGGTCATCCAGGATAGTTACTCTCAAGTCAAGTTGTGGCCATTCAATAATACCTTCTGAAAAGGTTGGTCTTTGTCAAGAGATACAAACCACTTTGTCTCACCTTGATCTCTGAGCATGTTTGCACAGCTGAATTTATGATGTAGAAATGATGTATGAATTTCACACTGAAAGCATGGAAAAGACTAGTATTATAGTTACTGTAAGAGACTATGAACAATAATGCGCTTCATTAGGTAATTTGATTGTGGAAACATGTTCATAAATCTCAGCGGGTAATGTTTCCCCCATTATTTGACAATAGCCAACCTCACCCTTTGCACATGCATGTTAGTGATCTCTAGTGGGTTGCCTCAGTGCACTCGTCATCATTCAGAGGCTCAACCATAGGATGAGTTGCAAGTTCATttcaaaaacatttaaaacatttccACTTTCAGAAGTCTTATagtttgtttgttttatcttttgCCCAAAATTGCAACCTCTCCATGGATACTCAAGACATTGTCATGGCAGTCGGTGCGGTAGCATATCAAATCAATAGACTTGCAAAGCAGCTTAATCTTTCCCATAGCTACACCCTCAAGCTCCCACAGCACCTAAGCTTGCAAGACATAGAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU935018 True 2810 lncRNA 0.40 2 56721807 56729664

Neighbor

gene id symbol gene type direction distance location
LOC110532437 LOC106572423 coding upstream 13480 56661757 ~ 56708327 (+)
LOC110532435 LOC106572422 coding upstream 69723 56645780 ~ 56652084 (+)
LOC110532433 LOC106572420 coding upstream 79824 56590691 ~ 56641983 (+)
LOC110531212 LOC106567287 coding upstream 258260 56246710 ~ 56463547 (+)
LOC110532427 LOC106572343 coding upstream 591394 56125754 ~ 56132936 (+)
LOC110532442 eif4e3 coding downstream 101080 56830744 ~ 56839626 (+)
LOC110532441 LOC106572418 coding downstream 110053 56839717 ~ 56863877 (+)
LOC110532445 LOC106572414 coding downstream 184918 56914582 ~ 56946999 (+)
LOC110532447 lmod3 coding downstream 217814 56947478 ~ 56948805 (+)
LOC110531214 lmod3 coding downstream 219140 56948804 ~ 56950054 (+)
G822362 NA non-coding upstream 3645 56717130 ~ 56718162 (+)
G822360 NA non-coding upstream 7324 56708563 ~ 56714483 (+)
G822354 NA non-coding upstream 66992 56652527 ~ 56654815 (+)
G822291 NA non-coding upstream 143151 56578443 ~ 56578656 (+)
G822379 NA non-coding downstream 2129 56731793 ~ 56732226 (+)
G822381 NA non-coding downstream 5640 56735304 ~ 56735899 (+)
G822382 NA non-coding downstream 8400 56738064 ~ 56738387 (+)
G822390 NA non-coding downstream 17043 56746707 ~ 56746918 (+)
G822399 NA non-coding downstream 28924 56758588 ~ 56758992 (+)
G822283 NA other upstream 148850 56572607 ~ 56572957 (+)
LOC110532426 NA other upstream 597622 56119005 ~ 56124213 (+)
G821409 pacsin1 other upstream 658152 56061706 ~ 56063655 (+)
G821363 uhrf1bp1 other upstream 746491 55974042 ~ 55975316 (+)
G822404 NA other downstream 32961 56762625 ~ 56763540 (+)
LOC110532462 LOC106572392 other downstream 612737 57342345 ~ 57958962 (+)
G823373 NA other downstream 1298955 58028619 ~ 58028857 (+)
G823467 NA other downstream 1475599 58205263 ~ 58244984 (+)
G823459 LOC106572386 other downstream 1517450 58216176 ~ 58250307 (+)

Expression


Co-expression Network