LOC110535615 (LOC106578708)


Basic Information

Item Value
gene id LOC110535615
gene name LOC106578708
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 34782869 ~ 34789746 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036935346.1
AAACGCTAACAGGATGtctcacatttatacatccggtgaaatatctgtctcatctAGCTGTGATTCAACTTTGGAAAACTAAACAGCGACATGGAATCGGAGAAAGAAGTGCAATCAATAGGAGATGTCCCTGAcccagaggaggaagagaagaggctgGCGGCAGCAGCCCGGGAAGCCAACCATCTAACTGAGTTGAGGCTGGTGCTGTTGGGCTGGAGGTGGCCTGGGAAGAGCCTGACAGGCAATACCATACTGGGCCACGAGGAGTTCCGCCTGGAGCGGGCGGCTGAATTCTGCGTCAAGCGTCAGACTGAGGTGGAGGGGCGCCAGGTGACGGTAATAGACACGCCGGGCTGGTTCTCGACACAGTCCACGCCACCAGTTTACCAGCAGGAGATGGTGCGGGGCGCCTCCATGTGCGGGCCCCTGGGCCCCCACGCTTTCTTGCTGGTCATCCCTGTGGGCATGTTTACCGAGGTGGACCGGGCCCGCATCGAGGAGCACTTGGCTCTGTTCGGGGAGCGTGTGTGGAGGCATACCATCGTGGTGTTCACCTGGGCAGATGTGCTGAGGAACATGTCCATCGAGAGGCACATCAAGCGAGAGGGGAAGGATCTGCAGTGGGTGCTGGAAAAGTGCAAGATGCGGTACTTTGTCATCAGCAACTACATATTTGGGGAGCACCCCCAGCTGCGACAGCTTATGGAGAAGATAGAGAAGGTGGTGGCGGAGGAGGGCATCTATAACCCAGAGGATGTGGAGGAGAAGAAACCTCTGGGCCAGAATCAGAACCAAACCCAGAACCGGGAGCTTGGAGCAAGGCCCAAAGTGAATTCTGCCGTAGGATTGGCCAAAATGGACATGGACCCGCCCCACAAGAAGAATCCATGATGATTGTCCAGGACAAGGCAATATTCCTCTATAGTAATATCAAAACTTAAATGAACAAGTCTTTAACAAGATAGTTTCACATAGACGTGAAGACAATGATAGTTATACCAATGATAttactagggatgcacgatatatcggaaTTGGCAGATGTTAGCTAAAAATgacaacatcggtatcggcccgagATCAAGTTTAACGCCGATTGTTTTTTAACAAATGTCAAAGCTactgtgcatacctatataatggCGTGATAACGCCACGTAAAATTTTGCACTACACGttcaacacagcattcctaacctagcccacacaatgtctgctgtgtgtattgagcagtcaacaagtcgagcagtcatttgaaagagtaagaaaattttaactcaaaggcgaaatccatgaAAGCCaacataatggaattcattgccttTGACAGTCAACTGTTCTCTGTCATGGGTgctgttggctttcgccgactggtcgagcaccggtacacactaccaagtgtgctatatttcagatgttgccctaccagagttacacagtaatagcgtcactgct
>XM_036935345.1
AAACGCTAACAGGATGtctcacatttatacatccggtgaaatatctgtctcatctAGCTGTGATTCAACTTTGGAAAACTAAACAGCGACATGGAATCGGAGAAAGAAGTGCAATCAATAGGAGATGTCCCTGAcccagaggaggaagagaagaggctgGCGGCAGCAGCCCGGGAAGCCAACCATCTAACTGAGTTGAGGCTGGTGCTGTTGGGCTGGAGGTGGCCTGGGAAGAGCCTGACAGGCAATACCATACTGGGCCACGAGGAGTTCCGCCTGGAGCGGGCGGCTGAATTCTGCGTCAAGCGTCAGACTGAGGTGGAGGGGCGCCAGGTGACGGTAATAGACACGCCGGGCTGGTTCTCGACACAGTCCACGCCACCAGTTTACCAGCAGGAGATGGTGCGGGGCGCCTCCATGTGCGGGCCCCTGGGCCCCCACGCTTTCTTGCTGGTCATCCCTGTGGGCATGTTTACCGAGGTGGACCGGGCCCGCATCGAGGAGCACTTGGCTCTGTTCGGGGAGCGTGTGTGGAGGCATACCATCGTGGTGTTCACCTGGGCAGATGTGCTGAGGAACATGTCCATCGAGAGGCACATCAAGCGAGAGGGGAAGGATCTGCAGTGGGTGCTGGAAAAGTGCAAGATGCGGTACTTTGTCATCAGCAACTACATATTTGGGGAGCACCCCCAGCTGCGACAGCTTATGGAGAAGATAGAGAAGGTGGTGGCGGAGGAGGGCATCTATAACCCAGAGGATGTGGAGGAGAAGAAACCTCTGGGCCAGAATCAGAACCAAACCCAGAACCGGGAGCTTGGAGCAAGGCCCAAAGTGAATTCTGCCGTAGGATTGGCCAAAATGGACATGGACCCGCCCCACAgagactgcctgttacgcggatgcagtaagccaagataagttgctagttagcat
>XM_021620720.2
AAACGCTAACAGGATGtctcacatttatacatccggtgaaatatctgtctcatctAGCTGTGATTCAACTTTGGAAAACTAAACAGCGACATGGAATCGGAGAAAGAAGTGCAATCAATAGGAGATGTCCCTGAcccagaggaggaagagaagaggctgGCGGCAGCAGCCCGGGAAGCCAACCATCTAACTGAGTTGAGGCTGGTGCTGTTGGGCTGGAGGTGGCCTGGGAAGAGCCTGACAGGCAATACCATACTGGGCCACGAGGAGTTCCGCCTGGAGCGGGCGGCTGAATTCTGCGTCAAGCGTCAGACTGAGGTGGAGGGGCGCCAGGTGACGGTAATAGACACGCCGGGCTGGTTCTCGACACAGTCCACGCCACCAGTTTACCAGCAGGAGATGGTGCGGGGCGCCTCCATGTGCGGGCCCCTGGGCCCCCACGCTTTCTTGCTGGTCATCCCTGTGGGCATGTTTACCGAGGTGGACCGGGCCCGCATCGAGGAGCACTTGGCTCTGTTCGGGGAGCGTGTGTGGAGGCATACCATCGTGGTGTTCACCTGGGCAGATGTGCTGAGGAACATGTCCATCGAGAGGCACATCAAGCGAGAGGGGAAGGATCTGCAGTGGGTGCTGGAAAAGTGCAAGATGCGGTACTTTGTCATCAGCAACTACATATTTGGGGAGCACCCCCAGCTGCGACAGCTTATGGAGAAGATAGAGAAGGTGGTGGCGGAGGAGGGCATCTATAACCCAGAGGATGTGGAGGAGAAGAAACCTCTGGGCCAGAATCAGAACCAAACCCAGAACCGGGAGCTTGGAGCAAGGCCCAAAGTGAATTCTGCCGTAGGATTGGCCAAAATGGACATGGACCCGCCCCACAATTCAGtggatggactgactgactgaaggagaGCTGGTGAGCCACCGCAGTACTGATTTCAGAGCTCTATGTCCATACGTTACCCCAAcctcagggcctgtattcataaagcgtctcagtgTAGGAATGTTGATCTACGATCAGTTccccttttagatcataatgaatgggtgggtgggggggcgTGACCCtgactctgagatgctttatgaatacaggcccagatTCTTTTAAACCTTTAAGACTTAATCTCTCTACCATTTTATATAAATAATAGTTATCTGTAACTGGATGTAGGCTAACATGATCAGGGGTCCCGTTAATGCGGAATTCTGCGTTTATCAcaccacaggggggggggggagataaaACCCATAAATATCTTGCTGCATTTTGTAAACAGAGATCTAAAATGCTTCTTGTAATTGCTGCTCGGCATCaggcttctttttttttgttgcttcagTTGCAATTCTACACTCCATTGAGAATTCACGAACGGGCATTCTATCAGAaggcagcgctctgactgatgtgtagctattTTTCTTCAGTACATTTTATCGGTGTAGCCTGCTTTTCTCTGGTAAAATGTACGATTAACTTCAAGCAAAACCTAAGTAAATGATGTGGCTGCCGGCCAAATAGCGTTtcacttctgttgtcatctgatgatAATGAAGCTATTTTCTGCTGAATGTGTTGCACTAATATATTTTATGTGAAGGAAAACTGTAGTTGCATGTCCCTGATCACTATTGAAGCAACAAAGGAAAACGTTTAATATAAAATAGTTAGAAACCTTGA

Function

NR:

description
GTPase IMAP family member 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036935346.1 False 1458 mRNA 0.50 3 34782869 34785397
XM_036935345.1 False 933 mRNA 0.56 3 34782869 34785909
XM_021620720.2 True 1687 mRNA 0.49 3 34782869 34789746

Neighbor

gene id symbol gene type direction distance location
trnar-ccg-25 NA coding upstream 14876 34767921 ~ 34767993 (+)
trnar-ccg-24 NA coding upstream 16353 34766444 ~ 34766516 (+)
trnar-ccg-23 NA coding upstream 17838 34764959 ~ 34765031 (+)
trnar-ccg-22 NA coding upstream 19309 34763488 ~ 34763560 (+)
trnar-ccg-21 NA coding upstream 20792 34762005 ~ 34762077 (+)
LOC110535618 LOC106578705 coding downstream 638275 35428021 ~ 35442236 (+)
LOC110535619 NA coding downstream 724729 35514475 ~ 35521583 (+)
adcyap1 LOC100135955 coding downstream 805476 35595222 ~ 35601608 (+)
LOC110535011 NA coding downstream 930343 35720089 ~ 35866083 (+)
LOC110535623 LOC106578698 coding downstream 1078519 35868265 ~ 35893791 (+)
G970969 NA non-coding upstream 9503 34773157 ~ 34773366 (+)
G970951 NA non-coding upstream 18787 34753289 ~ 34764082 (+)
G970942 NA non-coding upstream 56988 34725630 ~ 34725881 (+)
G970936 NA non-coding upstream 63675 34718936 ~ 34719194 (+)
G970934 NA non-coding upstream 66169 34716356 ~ 34716700 (+)
G971016 NA non-coding downstream 55491 34845237 ~ 34845761 (+)
G971261 NA non-coding downstream 222085 35011831 ~ 35016554 (+)
G971385 NA non-coding downstream 411318 35201064 ~ 35201384 (+)
G971479 NA non-coding downstream 546373 35336119 ~ 35336343 (+)
G971482 NA non-coding downstream 549461 35339207 ~ 35339546 (+)
G970489 LOC106578645 other upstream 260529 34516457 ~ 34522340 (+)
G970283 NA other upstream 602821 34179703 ~ 34180048 (+)
G970054 LOC106578636 other upstream 611882 34163816 ~ 34170987 (+)
G969752 LOC106578632 other upstream 987808 33794375 ~ 33795061 (+)
G969456 LOC106578609 other upstream 1178059 33604513 ~ 33604810 (+)
G972725 NA other downstream 1460227 36249973 ~ 36250586 (+)
LOC110535658 NA other downstream 2752350 37542062 ~ 37543202 (+)
G973918 NA other downstream 2861392 37651138 ~ 37679368 (+)
lztfl1 LOC106590188 other downstream 3041775 37813177 ~ 37835340 (+)
LOC110535015 LOC106578726 other downstream 3230703 37866715 ~ 38045713 (+)

Expression


Co-expression Network