LOC110536498 (LOC105030224)


Basic Information

Item Value
gene id LOC110536498
gene name LOC105030224
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 83341427 ~ 83361014 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036936539.1
CATATTCCACATGACTTCCAGAGTGCCGGCTGTCGCAGAGTTTAACCAAGACCAGTGCGTCAtagtctctctttccctctagcACCCCGAAAGAGAGGAACAACCGGCTGAGGCTGGGGATATAAAGAACCGCTATCATGGTGAATTTTACAGTAGACCAGATCCGTGCGATCATGGACAAGAAGTCCAACATCAGGAACATGTCTGTGATCGCCCATGTGGACCATGGGAAGTCCACTCTCACAGACTCCCTGGTGTGCAAGGCTGGCATCATCGCTGGCGCCCGGGCTGGCGAGACGCGTTTCACAGACACCAGGAAAGACGAGCAGGAGAGGTGCATCACCATCAAGTCAACaGCCATCTCTCTGTACTATGAATTGGCTGAGAATGACTTGGCCTTCATCAAACAGTGCAAGGATGGCTCTGGCTTCCTCATTAACCTCATAGACTCTCCCGGTCACGTGGACTTCTCCTCCGAGGTGACGGCTGCTCTCCGCGTCACTGACGGTGCACTAGTTGTAGTAGACTGCGTCTCAGgtgtgtgtgttcagaccgAGACAGTGCTGCGACAGGCCATCGCAGAGCGGATAAAGCCTGTTCTGATGATGAACAAGATGGACCGGGCGTTGCTGGAGCTGCAGCTGAAACCCGACGCACTTTTTGCCACCTTCCAGCGCATCGTAGAGAACGTCAACGTCATCATCGCCACCTACGGAGAGGACGAGGGCGGACCCATGGGCAGCATCATGGTGGACCCAATGGTGGGCACAGTGGGTTTCGGCTCGGGTCTCCACGGCTGGGCCTTCACTCTGAAGCAGTTTGCTGAGATGTACGTGGCCAAGTTCACAGCCAAGGGAGACCAAAAGACGGAGATGAACCCAGAGGAGCGCTGCAAGAAGGTGGAGGACATGATGAAGAAACTGTGGGGAGAAAaGTTCTTCGACCCGTCATGTGGCAAATTCAGTAAATCAGCCACCAACGCTGCGGGGGAAAAGCTCCCACGTACATTCTGCCAACTCGTCCTGGATCCCATCTTTAAGgtgtttgatgccatcATGAATTTTAACAAAGAGACTGCCGACAAGCTGATTAAGAAACTGGATGTGAAGCTCGATGCTGATGacaaggagaaagaggggaaaccACTGCTGAAGGCGGTGATGCGCCGCTGGCTGCCAGCGGGGGACGCTCTGCTCCAGATGATCACCATCCACCTCCCCTCCCCCGTTACGGCTCAGAGGTACCGCTGTGAGCTGCTCTACGAGGGGCCTGGCGACGACGAGGCCGCTATGGGCATTAAGAACTGCGACCCCAAAGCTCCCTTGATGATGTACATTTCCAAGATGGTGCCCACCAGCGACAAGGGTCGCTTCTACGCCTTCGGCCGCGTGTTCTCCGGCATGGTGGCCACGGGGCAGAAGGTTCGCATCATGGGACCCAACTACACTCCTGGGAAGAAGGAGGACCTGTATCTTAAACCCATTCAGAGGACCATTCTGATGATGGGGCGCTACacagagcccattgaggatgtgCCCTGCGGCAACATCGTGGGTCTGGTGGGAGTAGACCAATTCCTGGTGAAGACCGGGACCATCTCCACCTTTGAGCACGCCCACAACCTGAGGGTGATGAAGTTCAGCGTCAGTCCCGTGGTCAGGGTGGCGGTGGAGTGCAAGAACCCTGCTGACCTGCCCAAGCTGGTGGAGGGACTCAAACGCCTGGCCAAGTCTGACCCCATGGTCCAGTGCATCATTGAGGAGTCTGGAGAACACATTGTAGCTGGAGCTGGGGAGCTTCATCTGGAGATCtgcctgaaggatctggaggagGACCACGCTGGGATCCCCCTAAAGAAATCTGACCCTGTGGTGTCTTACCGCGAGACCGTAGCCGAGGATTCAGACCAGGTCTGCCTGTCCAAGTCCCCTAACAAACACAACCGTCTATACATGAAGGCCCGGCCCTTCCAGGATGGTCTGGCAGAGGATATCGATAAGGGGGACGTGAGCTCCAGACAGGAACTGAAGACCAGGGCTCGCTACCTGACTGAGAAGTACGAGTGGGAGGTGACAGAGGCCCGCAAGATCTGGTGTTTCGGCCCCGACGGGACGGGACCCAACATCCTGACGGACGTTACCAAGGGAGTGCAGTACCTCAATGAGATCAAGGACAGCGTGGTGGCAGGGTTCCAGTGGGCCTCCAAGGAGGGTGTCCTGTGTGAGGAGAACATGAGGGGGATACGTTTCGACGTCCATGATGTGACGCTGCATGCGGATGCCATCCACAGAGGGGGCGGACAGATCATCCCCACGGCACGCCGAGTCATCTACGCCTCTCAGCTCACAGCTCAGCCACGGCTCATGGAGCCAGTCTACCTGGTCGAGATCCAGTGTCCAGAGCACGTCGTTGGAGGGATCTACGGTGTGCTGAACAGAAAGAGAGGCATGGTATTTGAGGAGTCGCAGGTCGCTGGAACACCCATCTTCATCGTGAAGGCTTTCCTTCCAGTCAACGAATCGTTTGGTTTCACAGCGGACTTGAGATCCAACACAGGTGGCCAGGCCTTCCCCCAGTGTGTGTTCGACCACTGGCAGATCCTGCCCGGGGACCCCTTCGACGAGACCAGTCGGCCATGGCAAGTAGTGGCAGACACCCGCAAACGCAAAGGCCTCAAAGAAGGCATCCCTTCCCTGGACAACTTCCTGGATAAACTGTGATCGTCTGTGATTGGACTGCTGCTTCCTAGTGCAATTTAATGATCATAGCACCCTAATGtggaaatgtataaaataaaaatagccaaaccacaataacaacaacaatacacTGTATTATAACTAGAAAAGGTATGAGGGGGGAAAGTTGACTAATacaggtatttaaaaaaaatgccgcTTTATTGTTTTAAGTCTGAGATCCTGACAGCAAATAAAAAATGAGCAcctt

Function

NR:

description
elongation factor 2-like

GO:

id name namespace
GO:0042221 response to chemical biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0009790 embryo development biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K03234 EEF2; elongation factor 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036936539.1 True 2949 mRNA 0.55 15 83341427 83361014

Neighbor

gene id symbol gene type direction distance location
LOC110536507 LOC105014547 coding downstream 52478 83064063 ~ 83288949 (-)
LOC100136308 LOC106570939 coding downstream 379396 82873779 ~ 82962031 (-)
LOC118937425 NA coding downstream 467703 82872722 ~ 82873724 (-)
LOC118937424 NA coding downstream 470407 82868101 ~ 82871020 (-)
LOC110536490 zfr coding downstream 721801 82581716 ~ 82619626 (-)
LOC118937426 LOC100380868 coding upstream 333666 83692703 ~ 83698034 (-)
ypel1 ypel1 coding upstream 514920 83873900 ~ 83903039 (-)
LOC110536511 NA coding upstream 553799 83914813 ~ 83921303 (-)
LOC110535142 mapk1 coding upstream 561594 83922608 ~ 83982640 (-)
grsf1 grsf1 coding upstream 684498 84045512 ~ 84084200 (-)
G1025362 NA non-coding downstream 75088 83265951 ~ 83266339 (-)
G1025356 NA non-coding downstream 92834 83247578 ~ 83248593 (-)
G1025345 NA non-coding downstream 117392 83221646 ~ 83224035 (-)
G1025343 NA non-coding downstream 117541 83218505 ~ 83223886 (-)
G1025339 NA non-coding downstream 130423 83210315 ~ 83211004 (-)
G1025412 NA non-coding upstream 6753 83367767 ~ 83368529 (-)
G1025415 NA non-coding upstream 22242 83383256 ~ 83383588 (-)
G1025444 NA non-coding upstream 109706 83470720 ~ 83471123 (-)
G1025452 NA non-coding upstream 133503 83494517 ~ 83504865 (-)
G1025454 NA non-coding upstream 135603 83496617 ~ 83501794 (-)
LOC110536484 LOC106570928 other downstream 1082462 82257489 ~ 82522382 (-)
G1023858 NA other downstream 1427060 81912957 ~ 81914367 (-)
G1023618 NA other downstream 1724198 81615253 ~ 81617939 (-)
G1023156 NA other downstream 2200848 81139984 ~ 81140579 (-)
G1023036 NA other downstream 2443424 80893902 ~ 80898003 (-)
G1025481 NA other upstream 201288 83562302 ~ 83565574 (-)
G1025467 NA other upstream 260709 83544297 ~ 83626790 (-)
G1025498 NA other upstream 354669 83683265 ~ 83718776 (-)
G1026586 NA other upstream 1826312 85187326 ~ 85197500 (-)

Expression


Co-expression Network