XLOC_029003 (si:dkey-57c22.1)


Basic Information

Item Value
gene id XLOC_029003
gene name si:dkey-57c22.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 40525075 ~ 40536509 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00056086
atggcgtttattaaagaggagagtgaagatgtgaagattgaagaaacattcacaatcaaacaggaagatctgcaggaacaaacagAGAGAACGAAAAAACCCAAGCAAAAGCCTTGCCATAATTGTGGGGCTTTAAATGTTTCAAACTGCAAAACGTGCAGAAATTGTTTTGCTgccattgctttaaaagcaatcatcatggcaaaacaaaaaaacattgaggAGTCGTCATGGGcagcaaacaacaaaaaacacaggAATTCTGCCCGTGTTGTAGATTCTGCCCGCACTGCTgTTAAGAAATTGGAAATGCTGGGCTACAAGCCATTGTTGTTTAtttcaaaagaaaagaaaaaaggattCAACGCAGAGCTTATAACAACAATGGGTCCATTTGGAGAGGGACCACAGCAAAAAATTATAGATAAAATGACCAGCCTGTACgaagtttttattaaaaaTTTCCAGAGGTTTCAGAATTTGGCTGCAACAGACCCTGATGTCTGCCAAAACCTACCATCATCCGTTTCTCCTCCAGCTTCTATTCCTCCATCATCTTTCTCAAGCCTTCCTCCTCCACCATCTTTCCCAAACCTTTCTCCTCCACAAACTTCCTCCAGCTTTTCTCCTTCATCTGCTGTTCTTCTACCATCTTTCCCAAATCTTCCTCCTCCACAATCTTCATCCAGCTTTCCTCCTTCATCTGCTCCTCCATCTTTATCTTCCAACCTTATTCCTCCAACTAATTCCTCAAGCTTCAGTCCTCCTACCTCCTCTTACATTACCCCTCTTCCACCTGCCTCTTCATACAAAACACTTCTTGCTCCACCGCCTACTTCCCTCACTACTACACCTACTTCCTCTCTATCAAGTCCTGCAGTCCAGTGCATGACTACAGATTCCGGTGATTCAGatttatccTCCAGAGAAAGTGTCATAAAAGGGGGCAAACAAAAGAAGTGGATCTACAAACAAGCAGAATGCCAAGTACATTCCAACCAGAAAACCTTTCCTTATGACAGGATTGTGAAAAGGAGGATTGGGATGAAATGGAAAGACTCCTGGGAACCATTAAATCACTTTTTGTAA
>TCONS_00056087
GCCGCTTTAGTGCTGtaattcaactggagaaaggataaagtgtccaaacacagagaaaaactccagctgaagcgactgatctccacactgttataaagatggcgtttattaaagaggagagtgaagatgtgaagattgaagaaacattcacaatcaaacaggaagatctgcaggaacaaacagAGAGAACGAAAAAACCCAAGCAAAAGCCTTGCCATAATTGTGGGGCTTTAAATGTTTCAAACTGCAAAACGTGCAGAAATTGTTTTGCTgccattgctttaaaagcaatcatcatggcaaaacaaaaaaacattgaggAGTCGTCATGGGcagcaaacaacaaaaaacacaggAATTCTGCCCGTGTTGTAGATTCTGCCCGCACTGCTAATGCCAAGTACATTCCAACCAGAAAACCTTTCCTTATGACAGGATTGT

Function

symbol description
si:dkey-57c22.1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000093846

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00056086 False 1089 mRNA 0.42 7 40525075 40536045
TCONS_00056087 True 441 mRNA 0.41 4 40526014 40536509

Neighbor

gene id symbol gene type direction distance location
XLOC_029002 NA coding downstream 21345 40497817 ~ 40503730 (-)
XLOC_029001 NA coding downstream 27935 40488564 ~ 40497140 (-)
XLOC_029000 si:dkey-22h13.3 coding downstream 117222 40402017 ~ 40407853 (-)
XLOC_028999 si:dkey-22h13.2 coding downstream 160186 40357513 ~ 40364889 (-)
XLOC_028998 NA coding downstream 505372 40018973 ~ 40019703 (-)
XLOC_029004 NA coding upstream 15650 40552159 ~ 40598742 (-)
XLOC_029005 si:dkey-207m2.4 coding upstream 18195 40554704 ~ 40589579 (-)
XLOC_029006 NA coding upstream 175353 40711862 ~ 40937754 (-)
XLOC_029007 NA coding upstream 220334 40756843 ~ 40757716 (-)
XLOC_029008 NA coding upstream 289313 40825822 ~ 40828360 (-)
XLOC_028995 CR749167.1 non-coding downstream 695256 39829175 ~ 39829819 (-)
XLOC_028994 NA non-coding downstream 811125 39712778 ~ 39713950 (-)
XLOC_029011 BX649394.9 non-coding upstream 361348 40897857 ~ 40897963 (-)

Expression


Co-expression Network