G1025593


Basic Information

Item Value
gene id G1025593
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 83870154 ~ 83871329 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1167227
AAGGCCAGCCGGGGtttatgtctccccctctcccagcgATCTGGAGTTTCTTTAGAAATGGTATTATTTTACTCTGTGTATGTTTAGGTCCCGCTGGGTAGGGCTGGGGTGAAAGGTCCATTAAACCCTGGTTTGGCCTCTAGGGCCCTAATGTCTGACCTGCGCTGAGCTCTGTCGACTGTAGAAGTATATGGGGAGCTGGATAATCCCTCAAATTTACAGAACAGAAGAGCATTGACCTaggctctttctttctttccaacAATCAATATCCCCtttatacacctctctctctctctctctctctttctctctctctctctctctctctcactctctcgttaATCCAACTAGCACACAGGAAAAACAGTCACCAGTGTCTGTCAGTTTATACCAAATATAACATTGTTACTAGATTTCTAGAGAACTGGTGTCACAACTAAAGCTAAAAAGCCAATCAGACAGGTTGTTTGTTAGAGCTTTCAGACTCCTGGAGATTCAGACCACTCGTACAAAAAACCAAAACCTATTCCGGAACCTGTCAGGTGTGACTTCTCAGTAGTTCTCTAGAAGGTTCTCGATCATTCTGTAGAACGTTCTACAGTTGTTCTGTATTCTGGAACTCCTTTCAGAAATAATGTAAAAAGCCAGTCATTTGCTCCGAAAGATGATTGTTTATTTCCCCAGATATTATTTGTTGTTTTGGTGACACTGGCTCCGACTTCTGacgtagtttttttttttttttttttagatctaCAGGAGATATTACcacaggctgtgtcccaaatcacATTCCCTACCTATTTGCTACACTCTATAAAGtattatagggaacagggtcccgTTTGGGACGTTGGAACAGAGAGCTGATGACGAGATAGGTATCGGAGATGTTATTATCCCTGAGAAGAGACGATTAAAACTATACGAAGGAAAAGATGGTAACGTTTGATAAATGTGTTAAAATTGTTCAAATGAAAATAGGTCTAAAGTTTGCTGTATTTATAATGGCTGTATTAAGTCGTGCCTGGTTCTCTTTTTGTTTCTCCAAACACATTATATATGCTTTCTTTTTACTTGACTACAATTTATTTTGCGTTTCTGTATGTATGTTTTCACTGTATTGTAAAATGATCAGATATCACAATAAACTTTAAATGGCATTCGACTggg
>TU1167228
TGGAACAGAGAGCTGATGACGAGATAGGTATCGGAGATGTTATTATCCCTGAGAAGAGACGATTAAAACTATACGAAGGAAAAGATGGTAACGTTTGATAAATGTGTTAAAATTGTTCAAATGAAAATAGGTCTAAAGTTTGCTGTATTTATAATGGCTGTATTAAGTCGTGCCTGGTTCTCTTTTTGTTTCTCCAAACACATTATATATGCTTTCTTTTTACTTGACTACAATTTATTTTGCGTTTCTGTATGTATGTTTTCACTGTATTGTAAAATGATCAGATATCACAATAAACTTTAAATGGCATTCGACTggg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1167227 False 1176 lncRNA 0.40 1 83870154 83871329
TU1167228 True 319 lncRNA 0.33 1 83870154 83870472

Neighbor

gene id symbol gene type direction distance location
LOC118937426 LOC100380868 coding downstream 173548 83692703 ~ 83698034 (-)
LOC110536498 LOC105030224 coding downstream 509140 83341427 ~ 83361014 (-)
LOC110536507 LOC105014547 coding downstream 581205 83064063 ~ 83288949 (-)
LOC100136308 LOC106570939 coding downstream 908123 82873779 ~ 82962031 (-)
LOC118937425 NA coding downstream 996430 82872722 ~ 82873724 (-)
ypel1 ypel1 coding upstream 4605 83873900 ~ 83903039 (-)
LOC110536511 NA coding upstream 43484 83914813 ~ 83921303 (-)
LOC110535142 mapk1 coding upstream 51279 83922608 ~ 83982640 (-)
grsf1 grsf1 coding upstream 174183 84045512 ~ 84084200 (-)
adamts3 LOC107719190 coding upstream 363964 84235293 ~ 84426152 (-)
G1025620 NA non-coding downstream 9222 83860659 ~ 83860932 (-)
G1025619 NA non-coding downstream 10083 83859860 ~ 83860071 (-)
G1025615 NA non-coding downstream 14057 83855686 ~ 83856097 (-)
G1025612 NA non-coding downstream 16519 83852913 ~ 83853635 (-)
G1025610 NA non-coding downstream 17666 83849713 ~ 83852488 (-)
G1025595 NA non-coding upstream 1981 83873310 ~ 83873797 (-)
G1025627 NA non-coding upstream 8352 83879681 ~ 83880942 (-)
G1025642 NA non-coding upstream 35253 83906582 ~ 83907246 (-)
G1025643 NA non-coding upstream 36071 83907400 ~ 83908226 (-)
G1025644 NA non-coding upstream 38024 83909353 ~ 83909706 (-)
G1025498 NA other downstream 151546 83683265 ~ 83718776 (-)
G1025467 NA other downstream 243364 83544297 ~ 83626790 (-)
G1025481 NA other downstream 304580 83562302 ~ 83565574 (-)
LOC110536484 LOC106570928 other downstream 1611189 82257489 ~ 82522382 (-)
G1023858 NA other downstream 1955787 81912957 ~ 81914367 (-)
G1026586 NA other upstream 1315997 85187326 ~ 85197500 (-)
G1026978 NA other upstream 1742023 85613352 ~ 85614375 (-)

Expression


Co-expression Network