G1025630


Basic Information

Item Value
gene id G1025630
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 83911274 ~ 83916203 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1167275
gtatattctgtgtttagtgGGGGTCGTTGGGAtcacagtatattctgtgtttagtgGGGGTCGTTGGGAtcacagtatattctgtgtttagtgGGGGTCGTTGGGAtcacagtatattctgtgtttagtgGGGGTCATTGGGGTCGTTGGGATcgcagtatattctgtgtttagtgGGGGTCGTTGGGAtcacagtatattctgtgtttagtggtgttgttGGTAtcacagtatattctgtgtttagtgGGGGTCGTTGGGGTCTTTGGGATcgcagtatattctgtgtttagtgGGGGTCATTGGGATCgcagtatattctgtgtttcgTGGGGGTCGTATTCTGCAAATAAATGCACTTAGTCTCGCTGAGGATGATGGGATTTTATATTAGATATGTTGCTGAAGCTTTGATTCTGTGATGAGGACTAAAATGGAGATCATTTAATTTACTCTCCAATCGTTTTCTTTTATTttgcaaatgtttgttttttaaaattgtaaaATGAATGTTTCTATCGAATATTACTCTCGTATAGTATAGCCCTTTACACTCATATCTGTATACAGGAtgaaatggcagatttgggcacCTTAAGTTGGAACGCAGTGACTGTCCAGTCACATGATAGACATGTCAGAGGCTCTGTTCTTCACAGCTCTTGTGTTCTGACTGGCAGCCGTTCTGAACATGGACACCCCACTCAACAACAAGTTAGTTGCCCCCATCTCTCCAGGTAATTGGGCAACTTTCTGTCGTCTGATTGAGGTTAAAGCTGTAAATTAAGAAGAGGTGTCttgtgtattttgaaagatgagatgttgaggattataatgaataccgctttgatgtcataGAAGCAAACCAAACACCTGTTGAGTCCAAATGTGGACTTCatatttccatatcataaaactcatgtcacaTTGTGTCCATGTTTAGGATCACTGCTGTTTGATGTACAGCTACAAGATGACATGGTGAAAAAAACAGGCTTTCAGATCAAGCCCACCTGACCCAGGTTGAGATTCATATTGGACCGTTTCTGGACTGGGTGAAACAACAACAGTCTTTGTGTGACGGtggggatgcagggttgtgttccaagaCGAAACAACTACAAGTGTCCTCTAGTTCCTCACAGCTGGGAGAGGAGGAAAAACAGCTGTTAGCTGAAGACTGTTcgttgagtcataaaagtgcattgaaatgtcTTATGAACTGTGAACTCTGGAGAGGTGTGTTGCCACTTGGAGACACCCCAGGTAGTCTTCTCACTCAGACCCTTGTAATCGTTTTGTCTTGTGTTTCATCTACCCCACgttttccaggaatattcttattAACATGTTacagaatgtatccagagtattttcagatttcgtgATCAACAAATGGGGTGAAAAGTacagaaaatgtaaaaaagagCATGAAACCAACCGTGTGATGTTTAGATTCAGTCTTGTCAGGTGAACTTTGGTCTGATGATTTTCCCATAAGCTCCACTGATTcatttcaattgctaccatggtaaTAAATATGCTTTTCGTATTTCTTCTGTAGGAAACATTTTAAATGTTGCCCTATCTGTTTTGGCAACCCGTTACACTGGTGGGAACGTAAGACTTGTCGCCATGAATTGAAATACTCCTCTGTTTTGATCAGTAGAAAACCTTTTAATTGTCAATTTCACTTTCAAGCAACAAAAAACCACAAAGATCaagttttgttattttggttgttttgtgtttttgaagTTTCTGTTAGTAGCTAAACCAGATTATACACGGAGTGTacacaacattaggaacaccttcctaatactgagcTGAAGCCCTGTTTTCCCTCAGTACAGCCTTATTCATTCTTTGgagtatggactctacaaggtgtccaaagcgttccacagggatgctggtccatgttgaccccaacgcttcccacagttgtgtcaagttgtctggatgtccttttgggtggtggaccattcttgatacacacgggaaactgttgagtgtgaaaaacccagcagcgttgcagttcttgacacaaactggtgctcctggcacctactaccataccctgttcaaaggcacttcaatattttgtcttgccccattcaccctctgaatgacacacatacacaatccatgtctcaattgtctcaaggcttaaaaatccttcaacccgtctcctccccttcatctacactgattgaagtggatttaacaggtgacatcaacaagggatcatagctttcacctggattcacgtGTCATGGTAACAGCAAgtgttctgtacactcagtgtatatggagGTTGAAAGCAAGCCTTCGTGGTCTGGCTATCTGTCATGTTGAAGGAGTTGACTTGAACAAAGCTTTTCTGCTGATGTTGATGATATCAATCTGTTATTTTACATCTCTGCCATGTAAACCTGGAAAATAAATACC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1167275 True 2454 lncRNA 0.41 2 83911274 83916203

Neighbor

gene id symbol gene type direction distance location
ypel1 ypel1 coding downstream 8910 83873900 ~ 83903039 (-)
LOC118937426 LOC100380868 coding downstream 214668 83692703 ~ 83698034 (-)
LOC110536498 LOC105030224 coding downstream 550260 83341427 ~ 83361014 (-)
LOC110536507 LOC105014547 coding downstream 622325 83064063 ~ 83288949 (-)
LOC100136308 LOC106570939 coding downstream 949243 82873779 ~ 82962031 (-)
LOC110535142 mapk1 coding upstream 6405 83922608 ~ 83982640 (-)
grsf1 grsf1 coding upstream 129309 84045512 ~ 84084200 (-)
adamts3 LOC107719190 coding upstream 319090 84235293 ~ 84426152 (-)
smarca2 NA coding upstream 585682 84501885 ~ 84719806 (-)
dmrt2a LOC106570979 coding upstream 1045088 84961291 ~ 84965767 (-)
G1025645 NA non-coding downstream 959 83909816 ~ 83910315 (-)
G1025644 NA non-coding downstream 1568 83909353 ~ 83909706 (-)
G1025643 NA non-coding downstream 3048 83907400 ~ 83908226 (-)
G1025642 NA non-coding downstream 4028 83906582 ~ 83907246 (-)
G1025627 NA non-coding downstream 30332 83879681 ~ 83880942 (-)
LOC110536511 NA non-coding upstream 1206 83914813 ~ 83921303 (-)
G1025648 NA non-coding upstream 15158 83931361 ~ 83931902 (-)
G1025653 NA non-coding upstream 31385 83947588 ~ 83947841 (-)
G1025669 NA non-coding upstream 63317 83979520 ~ 83980276 (-)
G1025693 NA non-coding upstream 91689 84007892 ~ 84009482 (-)
G1025498 NA other downstream 192666 83683265 ~ 83718776 (-)
G1025467 NA other downstream 284484 83544297 ~ 83626790 (-)
G1025481 NA other downstream 345700 83562302 ~ 83565574 (-)
LOC110536484 LOC106570928 other downstream 1652309 82257489 ~ 82522382 (-)
G1026586 NA other upstream 1271123 85187326 ~ 85197500 (-)
G1026978 NA other upstream 1697149 85613352 ~ 85614375 (-)

Expression


Co-expression Network