G1025684


Basic Information

Item Value
gene id G1025684
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 84031772 ~ 84036310 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1167349
gtaaccacacccattgtgccattcatccgcctccatcacctcatgtttcagcaggaTAACCCACagtcatgaggcaaatggtggtcacaccagatactgactggttttctgatccacgaccctacttctttttaaaggtatctgtgaccaacagagtcatatctgtattctcagtcatgtgaaatccatagattaggacctaatgaatttatttcaaaggattgatttccttataggaagtgtaactcagtaaaaatctttGCCATGTAGTGTTTTTTGTCATGTCCAGTAGATATAAATCCAATGAAATGCATTGATCCTGATAATTACCTGTGTTTCCGTAGGCGTTCCACCTCCAGCTGTAGAGAGTCTATCTTGTCTCCAAACTCCTGTTTAAACAGTTTATGATCCTCCCCAGCCTGGTCCCGCTCCCTCTCCGCCTGACGGGATCtgcaccggggggggggggggcaaggtgAACGGCGGGGGGTAAAATGAACTTATGGTAAAATGAAAATTAAACAAAAACTCATGGACTAAACTTCAAATGAAAACGACAGAACTGAGAAATGAAATGAAGAAGACAACAAACTCATGGCAAATGAAGAAGACAACAAACTCATGGCAAATGAAGAAGACAACAAACTCATGGCAAATGAAATGAAGACGCAACAAACTCATGGCAAATGAAAAGAAGAAAACATAGTGGATAGAGAGAGTCTCCATTTCAacagaaaaagggagagaaacaggaagaggccTAAAGAGAAAGCTAGGATACGTCAAAAAGAAAGTGAAGAGAACAGAGACTCCTCCTCCCATCATCCAGAAGCAGACCAGAAGTTTGCATTGAATATGTTTTTATTATGCTAGTATTGGACTACAGTTGACATCTAAGGTAATAGAACCACATACAAAGGCATTTCCTTTTAACTTGCTTTTTCTCTGGGAATACTTTAGCGTTCTCATTCTGACCTGGACTGACCTTTCACGCAACCAGTACATCCTTACATGGTGATTTGGGTTGCTGTTCAACGGTAGATGTTTCTGTTCGGTGCTCTGGGGTGAGATTCCCAAAAACAATATATCTTCTAGCAGTAAGACCATGTTAAAAAATCCATCGGTAGGCAATAGAAGAACGATGATCTGAATGCTAAAGATTATATTTTGTTTTGACGAGATTAGAGGAGGAAGCGGAACTACAAACGGTGTGTACTGTAATGGTTCAGACGTCATCATACTATATTTACTGTGTTATGTTTCAGGAGTCCAgatctttttttttaaccttggGGTTTAGACTTGAGTTGGGCTTGGTGGCTGGTCTAAGGGACCGATGTCTGTCGGGCTGCTCTTAGAACACAGGAATGCATAGTGTTCCGGAACAATATACGTTCCTATGGTATTTACTGTGGGGTCATAAAGTAATGACACCTTTGATAAACATGTGCAAAAAGTGACTGTACATAATAAATATTGAGATATATTGTATGCAACAAAAATAGATATTATTTtaaactttttaaaaaaaaaatgtatttatttttataatcGCTCAGAAAAATAGATTTTGTTTAAACAagtattccattttttttttctcaaaaaaaGTTAGGTGTCAAAATGATTACCACCCTGTTTTCAATAGGGATGGGGGATACAGTCAGACGgaccttttttttaattaaaatcaGATGTTTTCAACGGGTTTCACAGCCAGAGACTGGGTAGAGTTCCATGAGGCCactgaccttaacaagggcctcAGGACCAGTGGAAGAACAACCTCTATGTTCATGTCCTCTGACCAGAGCAGCGGTTACAATCCAAGTGCAATTTCCGTTTATCAAACTCCCGACGTTTCCATTTGTTGGCTGACGGGAACACAGAGCACCTTGGccacacaccagtggtgggtttagtGTCTAAATGAGAACGTACGAGCAGAAAATAAACCCGGAACTACTGTACAATATgatggtggatctttgatgttttgGGGATATGTTGCTTCCTCTGGTCAATCGCATCATGAAATGAAACCAGAACCAGGACATTTAGCCAATAAACCTGGTTGCATCTGACAGAAGACTGAAACATGACCACAAGTGGgatttccagcaggacaataaccccaagcacacatcaaaatccacaaagaaaatgTTAAATTGGCCACAAAATAAAATAGagtacttgttaaacaaaatgtttttctctgagcaattgtatttgtATAAAATAATAACCACATtttttttggagcatacaatatagctaaGTATGATTTATTTTATACGGTAATTAGTGCTCATCTTATTCAAACGTGTCAATAATTTCGGACCCCACTGTATCTATATAGTAAACGGCTCTGAGGTATAGCCTACGGTCCTTATAGTCTGATCTAAGGACCTATGCTGCTGTTGGCAGAGATGGGCTACATTTGAAATATCTATTTCAATTACTTAAGTATTTTGTAAATGTGGATTTCGCCAGGCTGAACGACACTCCGATGTATTCTGTAACAAGATACTTTCGAAAGATGTCATTCGTATTTTCAGAAATAGAAAATACTTTtctataacatttttttttatttttttttcaaatagcGATTCATGATTTTGTGGCCCCCTTTTCACCCTGCATTGGTATCAGTAGTCTGATGGCACTACGGTGTGATAAGAACGTCTGCTGAATGAACTAAACATACATGTATATGGAAAAATTAACAATTGCAAAGCATGCTGAGTAATATTTGAATGAGCTccgcccccccccaaaaaaaggccaataataataataataataatacccagtgtgctttgcagttAATTTTGGTCTGTTCATTTTCATAATACATAATATTTTGGTCACTTAAGCCTTCCGCATCCTTCGGTTTTGGCTGGCGCCTGGCTAAACTAGTGTGCTCGCATACTTCCTTAAGTCCTTTGCTTGAAAAAAAAGAGGGAAAAAAAAGTgacaatagtactgtttgtccatcttaagacgccgtagccagtatacacttcctcaaaatagtaaGAATGAATCTAAGCTAACTCAAGAAATTCCGTCATTGGCGTTTTTTTGCCGAGGAGATCCTGGTCCCGCAAttttagaaaaaaaaaacttcccaaaatgtcatcataatatacaTGCATGAACCGTCCTTAGTGTTTGGGAAGGGAAGCACACGCCTTTACagttcaactaaggtagataccAACATATCACAGTCACAGCAAGTAAAACGATTCTGTCACCATTTGCTGAGGATGCTGTTGCTGTTCGGGCCGGctacttgcaaatgtatttctgtatACAAATACATGTAGTTGAAGTATTTTGTCGTTTATTTTAGATACATTGATCTTTATGGTATTTTGTAAATTCTTGCCAATTCTTGACTGTAGGGGGGGGGCTTCAGGGGATCGATTTACAAGAAACAACAACAGCCATTTCAATTTTCAGAACAGtacatccatctctcttcccgAAAATGGCTGACATCCCAAACTCGAAGTCTTGTATCAGGGAACATTCATTacatgtgtgtggggggggggggggatctgataTCTTCATTCCTTACGGAATGAACCCAAGCTAAAGTCCTGAAACCCAGCGAGCAGAATGGAGCCCCCTCTGCACTGCTAGTATACCGACAGAAAAACACACGGAAGAACAGAAAACCAGGCTAGAGGAAGCCAGAGAGACTATATCAGTCAGGAGAGTAGAGGTTTaggaaataaaatgtaatttaacaCTAGAGAAGGAAAGGAACCGTAACAGATATCATACCAAAAAATAAGTAACCTAGTTAAAGGGATAGTCCGGGATTTCGGCAATAaggtcctttatctacttccctacagttagatgaactcgtggacagcattttcatgtctctgtgtgcagtttgaagaaagttgctaactagcattggtacaattgctaactagcgttagcgcgatgactggaagtctatggtatatGCTAGCAGACCCGATTGcattccagtcattgcgctaacattAGTTAACATGATCgcagataccatagacttccagtcattgccctaacgctagttagcaattgcgctagcGCTAGTTTGCAACTTGCTTCAAACTGCATGCGGAGACATACAAAATGGAATCCACAAGTTCATCTAACTCTAGGGAAGTAGACACATGACCTCactgccaaaatcctgaagtatccctttaagtaaTTTCTATATTATGCAAATATTGTTTTTTTCTGATTTGGATCAGGGTTTATCAAACGAGGATGTGGGTGTCATTctggggaacagaggagaggggagggaggactaCTGTTGCTTCTGAAGCAGTTTCTCTGCGTTGGAACTCAAGCTTCTGGCCTGCTTCACACAGTCTTCCTCA
>TU1167348
AGAACTGAGAAATGAAATGAAGAAGACAACAAACTCATGGCAAATGAAGAAGACAACAAACTCATGGCAAATGAAGAAGACAACAAACTCATGGCAAATGAAGAAGACGCAACAAACTCATGGCAAATGAAAAGAAGAAAACATAGTGGATAGAGAGAGTCTCCATTTCAacagaaaaagggagagaaacaggaagaggccTAAAGAGAAAGCTAGGATACGTCAAAAAGAAAGTGAAGAGAACAGAGACTCCTCCTCCCATCATCCAGAAGCAGACCAGAAGTTTGCATTGAATATGTTTTTATTATGCTAGTATTGGACTACAGTTGACATCTAAGGTAATAGAACCACATACAAAGGCATTTCCTTTTAACTTGCTTTTTCTCTGGGAATACTTTAGCGTTCTCATTCTGACCTGGACTGACCTTTCACGCAACCAGTACATCCTTACATGGTGATTTGGGTTGCTGTTCAACGGTAGATGTTTCTGTTCGGTGCTCTGGGGTGAGATTCCCAAAAACAATATATCTTCTAGCAGTAAGACCATGTTAAAAAATCCATCGGTAGGCAATAGAAGAACGATGATCTGAATGCTAAAGATTATATTTTGTTTTGACGAGATTAGAGGAGGAAGCGGAACTACAAACGGTGTGTACTGTAATGGTTCAGACGTCATCATACTATATTTACTGTGTTATGTTTCAGGAGTCCAgatctttttttttaaccttggGGTTTAGACTTGAGTTGGGCTTGGTGGCTGGTCTAAGGGACCGATGTCTGTCGGGCTGCTCTTAGAACACAGGAATGCATAGTGTTCCGGAACAATATACGTTCCTATGGTATTTACTGTGGGGTCATAAAGTAATGACACCTTTGATAAACATGTGCAAAAAGTGACTGTACATAATAAATATTGAGATATATTGTATGCAACAAAAATAGATATTATTTtaaactttttaaaaaaaaaatgtatttatttttataatcGCTCAGAAAAATAGATTTTGTTTAAACAagtattccattttttttttctcaaaaaaaGTTAGGTGTCAAAATGATTACCACCCTGTTTTCAATAGGGATGGGGGATACAGTCAGACGgaccttttttttaattaaaatcaGATGTTTTCAACGGGTTTCACAGCCAGAGACTGGGTAGAGTTCCATGAGGCCactgaccttaacaagggcctcAGGACCAGTGGAAGAACAACCTCTATGTTCATGTCCTCTGACCAGAGCAGCGGTTACAATCCAAGTGCAATTTCCGTTTATCAAACTCCCGACGTTTCCATTTGTTGGCTGACGGGAACACAGAGCACCTTGGccacacaccagtggtgggtttagtGTCTAAATGAGAACGTACGAGCAGAAAATAAACCCGGAACTACTGTACAATATgatggtggatctttgatgttttgGGGATATGTTGCTTCCTCTGGTCAATCGCATCATGAAATGAAACCAGAACCAGGACATTTAGCCAATAAACCTGGTTGCATCTGACAGAAGACTGAAACATGACCACAAGTGGgatttccagcaggacaataaccccaagcacacatcaaaatccacaaagaaaatgTTAAATTGGCCACAAAATAAAATAGagtacttgttaaacaaaatgtttttctctgagcaattgtatttgtATAAAATAATAACCACATtttttttggagcatacaatatagctaaGTATGATTTATTTTATACGGTAATTAGTGCTCATCTTATTCAAACGTGTCAATAATTTCGGACCCCACTGTATCTATATAGTAAACGGCTCTGAGGTATAGCCTACGGTCCTTATAGTCTGATCTAAGGACCTATGCTGCTGTTGGCAGAGATGGGCTACATTTGAAATATCTATTTCAATTACTTAAGTATTTTGTAAATGTGGATTTCGCCAGGCTGAACGACACTCCGATGTATTCTGTAACAAGATACTTTCGAAAGATGTCATTCGTATTTTCAGAAATAGAAAATACTTTtctataacatttttttttatttttttttcaaatagcGATTCATGATTTTGTGGCCCCCTTTTCACCCTGCATTGGTATCAGTAGTCTGATGGCACTACGGTGTGATAAGAACGTCTGCTGAATGAACTAAACATACATGTATATGGAAAAATTAACAATTGCAAAGCATGCTGAGTAATATTTGAATGAGCTccgcccccccccaaaaaaaggccaataataataataataataatacccagtgtgctttgcagttAATTTTGGTCTGTTCATTTTCATAATACATAATATTTTGGTCACTTAAGCCTTCCGCATCCTTCGGTTTTGGCTGGCGCCTGGCTAAACTAGTGTGCTCGCATACTTCCTTAAGTCCTTTGCTTGAAAAAAAAGAGGGAAAAAAAAGTgacaatagtactgtttgtccatcttaagacgccgtagccagtatacacttcctcaaaatagtaaGAATGAATCTAAGCTAACTCAAGAAATTCCGTCATTGGCGTTTTTTTGCCGAGGAGATCCTGGTCCCGCAAttttagaaaaaaaaaacttcccaaaatgtcatcataatatacaTGCATGAACCGTCCTTAGTGTTTGGGAAGGGAAGCACACGCCTTTACagttcaactaaggtagataccAACATATCACAGTCACAGCAAGTAAAACGATTCTGTCACCATTTGCTGAGGATGCTGTTGCTGTTCGGGCCGGctacttgcaaatgtatttctgtatACAAATACATGTAGTTGAAGTATTTTGTCGTTTATTTTAGATACATTGATCTTTATGGTATTTTGTAAATTCTTGCCAATTCTTGACTGTAGGGGGGGGGCTTCAGGGGATCGATTTACAAGAAACAACAACAGCCATTTCAATTTTCAGAACAGtacatccatctctcttcccgAAAATGGCTGACATCCCAAACTCGAAGTCTTGTATCAGGGAACATTCATTacatgtgtgtggggggggggggggatctgataTCTTCATTCCTTACGGAATGAACCCAAGCTAAAGTCCTGAAACCCAGCGAGCAGAATGGAGCCCCCTCTGCACTGCTAGTATACCGACAGAAAAACACACGGAAGAACAGAAAACCAGGCTAGAGGAAGCCAGAGAGACTATATCAGTCAGGAGAGTAGAGGTTTaggaaataaaatgtaatttaacaCTAGAGAAGGAAAGGAACCGTAACAGATATCATACCAAAAAATAAGTAACCTAGTTAAAGGGATAGTCCGGGATTTCGGCAATAaggtcctttatcta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1167349 False 4409 lncRNA 0.40 2 84031772 84036310
TU1167348 True 3307 lncRNA 0.39 2 84032314 84035752

Neighbor

gene id symbol gene type direction distance location
LOC110535142 mapk1 coding downstream 49132 83922608 ~ 83982640 (-)
LOC110536511 NA coding downstream 112143 83914813 ~ 83921303 (-)
ypel1 ypel1 coding downstream 129408 83873900 ~ 83903039 (-)
LOC118937426 LOC100380868 coding downstream 335166 83692703 ~ 83698034 (-)
LOC110536498 LOC105030224 coding downstream 670758 83341427 ~ 83361014 (-)
grsf1 grsf1 coding upstream 9202 84045512 ~ 84084200 (-)
adamts3 LOC107719190 coding upstream 198983 84235293 ~ 84426152 (-)
smarca2 NA coding upstream 465575 84501885 ~ 84719806 (-)
dmrt2a LOC106570979 coding upstream 924981 84961291 ~ 84965767 (-)
LOC118937429 dmrt3 coding upstream 1009804 85046114 ~ 85122372 (-)
G1025701 rufy3 non-coding downstream 7281 84020246 ~ 84024491 (-)
G1025693 NA non-coding downstream 22290 84007892 ~ 84009482 (-)
G1025669 NA non-coding downstream 51496 83979520 ~ 83980276 (-)
G1025653 NA non-coding downstream 83931 83947588 ~ 83947841 (-)
G1025648 NA non-coding downstream 99870 83931361 ~ 83931902 (-)
G1025685 NA non-coding upstream 7464 84043774 ~ 84047257 (-)
G1025708 NA non-coding upstream 24043 84060353 ~ 84080646 (-)
G1025709 NA non-coding upstream 45230 84081540 ~ 84082380 (-)
G1025721 NA non-coding upstream 66904 84103214 ~ 84104323 (-)
G1025728 NA non-coding upstream 71873 84108183 ~ 84109397 (-)
G1025498 NA other downstream 313164 83683265 ~ 83718776 (-)
G1025467 NA other downstream 404982 83544297 ~ 83626790 (-)
G1025481 NA other downstream 466198 83562302 ~ 83565574 (-)
LOC110536484 LOC106570928 other downstream 1772807 82257489 ~ 82522382 (-)
G1026586 NA other upstream 1151016 85187326 ~ 85197500 (-)
G1026978 NA other upstream 1577042 85613352 ~ 85614375 (-)

Expression


Co-expression Network