G1026031


Basic Information

Item Value
gene id G1026031
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 84226393 ~ 84235238 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1167787
TGGAATCGACCCGCTGTCCGCCAGTGGAATCAACCTGCTGTCCGTCAGTGGAATCAACCCGCTGTCCGTCAGTGGAATCAACCCGCTGTCCGCCAGTCAAACGTAGAGTGGGTAGATTAGACGATCTTGTGTTAGTAACCAACAAGACACTGAACACAGAGAACATAGAGGGTAGTAGGTGTCTCGAACTATGCTGAAACACACAGTGCTCAGAGTTACAGTGAGTTTATTTTCCCCTGTCATTTAAGGTTAATGTGCTGTCTTTAAGACATTGCTGCTAATGTTATGCAAAGCTTTTAATGATCGAGGACGCTAGCTAGTTTGTTAGTGTTGTACCATTTGCCCCTCCATATTTACCGTAGAGCGCATCATGGGGATTCTAGTATGTCGTGGATGTCACGTTCTAGATAAATGGTTGAACTaattcctgtctcctgtctcatcaTTACTGAATTCTTAGTAAGGCGTGGTTATGAAACCAACGAGACATAAAAGATTGGCGACAAGTAAGTCTGAACCTACAGGAAGTATTCTGTCTGGAAACAGTTGGGTTTTTACGAGTTAAAGtgcaaaatgttgatttccaGAAGGCATTTTTGCCCAAAAATACATAGATATTTTTTGGAATTACATTAAAacgcctctcctgtgaagtaatgaactgcgacatatgcctagcttcctgaaacgggtcacatacaTGATATTTTTCCTTATTCAACAAAAGTGGGGCAATGGGGCTTGGAATGACTgaaatgctttctaaatatagtaacA
>TU1167786
TGTTAGAGACCCCCTAAGCAGCAGTGACAGGTTGTTTGAGTTGAAACCCACCATATACAGTATCACCAGAGCAGTTGGACTGAAGCCCCAGTCATGTTACAACGTTACTCTTAGGAAATTGTTCTAGTTGTATAGAATTTCAATATCCAGCTATTTTTGTTTTACTGGCGCTCTCTTATTTCTAAAAGTCACTGTAAAaactatataatatacagtacatatattaaACATTGTTAAAATGTCAGTATTATTATAACGAAGGCAAGATGACTCTGTCACAGGTTAAATCACCTTTTGGTTCCTAAACTACAGGCCCACAGACATACTAACATCTCCAGACCCATATGCAGATATTCCAGAACCATATGCAGATATTCCAGAACCATATGCAGATATTCCAGAACCACATGCAGATATTCCAGAACCATAATATGAAATGTCAGGTGGTGTATTATTTGTTCCCTACAGTACTCGGCTACAGGCTGTTGTAGCAGAATATTCATCAGGTTGTCAATACTTTGTTTAATGTCTTCATGAACACACAGGGACAACAGGCAGAGACAACAGACCATCACCACATCTGAGAGGGATATATAGTATCCCTAAAGCTCTTTAGAGAGGGAATCTATGGATTCTATACCACCAGGGGGTTTGTTAGTATTTAACACACACATTGTGTGAGCTCTCCATGCCAATGCTTTTGTGAAGATGGACTTACAAAATATCTTTATAGGGAGCATATGATAATAGATGTCTAGCtttgtcagagagggagagagagagagctatttaTTGTAAAATGATTTTGTCAACCACAATGCATCTGACTGCAATAGCGAACAAACCGATGATGATGTTTCAGTTGAGTTCAATGTGCAACCGATCATTCTTACTCCTGTGTTGTCATTATAGGACCTAGTGTTGTCGTTATAGTACTTGTAAATAGGATTTAGAAGGTCAATATTTATTAAGATAGTGGTCCTGCTCTTTTTCCTGTACAGTGCCTTCTGGTTGCCGAGGTGTTGTAGAAATAACCaaacaatattattattataggtTCTAATAATAACCAAACTAAACCCAACATCAAGACCAACCACCTCATTCCAGCTCAACGCTTTCACTTCAGATCAACATTAGTGGAATCAACCCGATGTCCATCAGTAGAATCAACCCACTGTCCGTCAGTGGAATCAACCCGCTGTCCGTCAGTGGAATCAACCCGCTGTCCGTCAGTGGAATCAACCCGCTGTCCGCCAGTCAAACGTAGAGTGGGTAGATTAGACGATCTTGTGTTAGTAACCAACAAGACACTGAACACAGAGAACATAGAGGGTAGTAGGTGTCTCGAACTATGCTGAAACACACAGTGCTCAGAGTTACAGTGAGTTTATTTTCCCCTGTCATTTAAGGTTAATGTGCTGTCTTTAAGACATTGCTGCTAATGTTATGCAAAGCTTTTAATGATCGAGGACGCTAGCTAGTTTGTTAGTGTTGTACCATTTGCCCCTCCATATTTACCGTAGAGCGCATCATGGGGATTCTAGT
>TU1167788
TGTTAGAGACCCCCTAAGCAGCAGTGACAGGTTGTTTGAGTTGAAACCCACCATATACAGTATCACCAGAGCAGTTGGACTGAAGCCCCAGTCATGTTACAACGTTACTCTTAGGAAATTGTTCTAGTTGTATAGAATTTCAATATCCAGCTATTTTTGTTTTACTGGCGCTCTCTTATTTCTAAAAGTCACTGTAAAaactatataatatacagtacatatattaaACATTGTTAAAATGTCAGTATTATTATAACGAAGGCAAGATGACTCTGTCACAGGTTAAATCACCTTTTGGTTCCTAAACTACAGGCCCACAGACATACTAACATCTCCAGACCCATATGCAGATATTCCAGAACCATATGCAGATATTCCAGAACCATATGCAGATATTCCAGAACCACATGCAGATATTCCAGAACCATAATATGAAATGTCAGGTGGTGTATTATTTGTTCCCTACAGTACTCGGCTACAGGCTGTTGTAGCAGAATATTCATCAGGTTGTCAATACTTTGTTTAATGTCTTCATGAACACACAGGGACAACAGGCAGAGACAACAGACCATCACCACATCTGAGAGGGATATATAGTATCCCTAAAGCTCTTTAGAGAGGGAATCTATGGATTCTATACCACCAGGGGGTTTGTTAGTATTTAACACACACATTGTGTGAGCTCTCCATGCCAATGCTTTTGTGAAGATGGACTTACAAAATATCTTTATAGGGAGCATATGATAATAGATGTCTAGCtttgtcagagagggagagagagagagctatttaTTGTAAAATGATTTTGTCAACCACAATGCATCTGACTGCAATAGCGAACAAACCGATGATGATGTTTCAGTTGAGTTCAATGTGCAACCGATCATTCTTACTCCTGTGTTGTCATTATAGGACCTAGTGTTGTCGTTATAGTACTTGTAAATAGGATTTAGAAGGTCAATATTTATTAAGATAGTGGTCCTGCTCTTTTTCCTGTACAGTGCCTTCTGGTTGCCGAGGTGTTGTAGAAATAACCaaacaatattattattataggtTCTAATAATAACCAAACTAAACCCAACATCAAGACCAACCACCTCATTCCAGCTCAACGCTTTCACTTCAGATCAACATTAGTGGAATCAACCCGATGTCCATCAGTAGAATCAACCCGCTGTCCGTCAGTGGAATCAACCCGCTGTCCGTCAGTGGAATCAACCCGCTGTCCGCCAGTCAAACGTAGAGTGGGTAGATTAGACGATCTTGTGTTAGTAACCAACAAGACACTGAACACAGAGAACATAGAGGGTAGTAGGTGTCTCGAACTATGCTGAAACACACAGTGCTCAGAGTTACAGTGAGTTTATTTTCCCCTGTCATTTAAGGTTAATGTGCTGTCTTTAAGACATTGCTGCTAATGTTATGCAAAGCTTTTAATGATCGAGGACGCTAGCTAGTTTGTTAGTGTTGTACCATTTGCCCCTCCATATTTACCGTAGAGCGCATCATGGGGATTCTAGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1167787 False 777 lncRNA 0.42 2 84226393 84233690
TU1167786 False 1548 lncRNA 0.40 2 84233307 84235238
TU1167788 True 1524 lncRNA 0.40 2 84233307 84235238

Neighbor

gene id symbol gene type direction distance location
grsf1 grsf1 coding downstream 142193 84045512 ~ 84084200 (-)
LOC110535142 mapk1 coding downstream 243753 83922608 ~ 83982640 (-)
LOC110536511 NA coding downstream 306764 83914813 ~ 83921303 (-)
ypel1 ypel1 coding downstream 324029 83873900 ~ 83903039 (-)
LOC118937426 LOC100380868 coding downstream 529787 83692703 ~ 83698034 (-)
adamts3 LOC107719190 coding upstream 55 84235293 ~ 84426152 (-)
smarca2 NA coding upstream 266647 84501885 ~ 84719806 (-)
dmrt2a LOC106570979 coding upstream 726053 84961291 ~ 84965767 (-)
LOC118937429 dmrt3 coding upstream 810876 85046114 ~ 85122372 (-)
kank1a kank1 coding upstream 1004371 85239609 ~ 85392002 (-)
G1025752 NA non-coding downstream 30899 84184860 ~ 84195494 (-)
G1025746 NA non-coding downstream 81743 84144427 ~ 84144650 (-)
G1025744 NA non-coding downstream 82120 84144005 ~ 84144273 (-)
G1025735 fbxl8 non-coding downstream 88999 84136245 ~ 84137394 (-)
G1025724 NA non-coding downstream 113754 84112208 ~ 84112639 (-)
G1026091 NA non-coding upstream 137740 84372978 ~ 84378903 (-)
G1026111 NA non-coding upstream 185339 84420577 ~ 84421700 (-)
G1026152 NA non-coding upstream 229420 84464658 ~ 84465602 (-)
G1026164 NA non-coding upstream 281839 84517077 ~ 84520777 (-)
G1026165 NA non-coding upstream 289157 84524395 ~ 84534134 (-)
G1025498 NA other downstream 507785 83683265 ~ 83718776 (-)
G1025467 NA other downstream 599603 83544297 ~ 83626790 (-)
G1025481 NA other downstream 660819 83562302 ~ 83565574 (-)
LOC110536484 LOC106570928 other downstream 1967428 82257489 ~ 82522382 (-)
G1026586 NA other upstream 952088 85187326 ~ 85197500 (-)
G1026978 NA other upstream 1378114 85613352 ~ 85614375 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00010144 adamts3,LOC103134868 misc CM030129.1 CM030129.1 16465564 ~ 16547620 (+)