LOC110536953 (LOC106561351)


Basic Information

Item Value
gene id LOC110536953
gene name LOC106561351
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 10958443 ~ 10961023 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036936906.1
AACAGCAAGGTGGGCCAGCCAGCAAAGGGAGAGAACACCAGAAGAGGCCTTCCTGTTTAGTGGAACTGGAACTATACTCAAGAACAAACAAATCATCTGATTCTAGAAGACACTTTGTAACACACTGAGAACCAAACATGAGAGGATCTTCCTATTCCCAGAAATCCCAGTCCCTGCAGGTGAGTGGGGCACGCAGCAGTATGCGAGTTCAGAGCCCCTCTCCCTCTCGGTGCCGTGGATCCTCGTACAACAACCGTGGACGCTCCGGATACCAGGACGGCCACGTGTCCTCGGCTGTGGAGTTGGGCACAGAGATACACCAGGTCCATGCCAACGAGAAGGAGGAGATGCAGGAGCTAAACGTGAGGTTTGCAGGCTACATCGAAAAAGTACAGGCCCTTGAACAGAGGAACGCCCTGCTGATGGCCGAGCTGGCTGCGCTACAGGGCCGCTTCAAGGGAGGCCCCACCGGCATCGGAGAAGAGTACAACCTCAAGTTCAAGGAGATGAGGGAGCTGATCGAAGCCTTGACCAATGAGAAGGGAGCTGCTGATATCGAGAGGGGATacattgaggaggaggtggaggtgtggAGAATGAAACTGGAAGAGGAGCTAGCACTGAAAGaggaggcagagatgatCCTGAGGGAATTCCGTCAAGACGTTGACAATGCCACTCTGCAGAAGGCTGAGCTCGAGAAGAGTGTCGAACAGCTGGTGGCCGAGATTGAGTTCCTCAAGAAGTTGCATGACGAGGAAGTTGCCGACCTCATGAAGCAGATCGAGGACTCCAAGGTGACCACGGAACTCGACGGTGACCGCCCCGACCTCGCCGCCTACCTCCGCAACATGCGCGCCGAGATTGAGACTGTGGCGGCCAAGAACGTCCAGGAAGCCGAGAAGTGGTACAAGGGCAAGTTTGAAACCCTCAAAGAAGTCGCAGGCAAGAAAGAAGAGCAGATGAAGTCCATGAAAGAAGAGATCACCACCTTCCACAACCAGGTGACAGACCTCCAGAACCAGATCGACGGGCTGAGGGCGAGAAACGCGGCCCTGGAGCAACAGCTAGAGGACATGGAGATGGCCCACATGGATAAGGTTGGAGGCCTGGAGGGTATCATTGCTCAGCTGGAGCACCAGCTCTGCGAGACCAAGATGGAGATGGGCAAGTACCTGGCCGACTACCAAGAGCTGCTGCACATCAAGCTGAAGCTGGATGCTGAAATCGCAGTCTACAGGAAGctgctggagggagaggagagcaggctgGGGATCTCTGCAGGGAAACAACCAGAAGCTTAAGGTGTCTAAATATCATTCCAGACAGAGGAGCGCTTCAGATCAAAAGGAGCTGTCACAGAGGACCACCTCAATGTCCTGCAGTGTGGAGACTCACCAGCTGCCAGACGGTCTGCCTGAGCACCCCACGTTCTCCCCTACCACCAAGCTTGTCAACTCCCCCTACCTTCACTCCTCTGTTCCACCTACCCTCCCACCCTATCAGCCCCCCACCCTCCTTCTGCCCCCACCCACTGTCAACACCTAGCACATTCCATCACACCTTCCCAACCAGCCCACCCGTCAAcctcccaccacctcctcccAGTCCTGCCTGCCCCTGTCAAccccccaccacctcctcccAACCAGCCCACCCCTGTCAACCCCACCCCCTCATCCCAGCCCTGCCCGCCCCTGTcagccccccaccaccacctcctcccaaCCAGCCCACCCCTGTCAGCCCTTGTCATGTCACGCTGTGCTACGGTTAACTCGTCAAAACAACACATCACTTTtatttaaaatgtcatttaaacCCCCTTTACCCCACCTATTTTCATGTTATGTAACATAACTGAAGACGTTCACATAAATGTATACCAAGTACTACTTAATAAACAAAGCTTGACTTGAGTGCATTACA
>XM_036936907.1
AACAGCAAGGTGGGCCAGCCAGCAAAGGGAGAGAACACCAGAAGAGGCCTTCCTGTTTAGTGGAACTGGAACTATACTCAAGAACAAACAAATCATCTGATTCTAGAAGACACTTTGTAACACACTGAGAACCAAACATGAGAGGATCTTCCTATTCCCAGAAATCCCAGTCCCTGCAGGTGAGTGGGGCACGCAGCAGTATGCGAGTTCAGAGCCCCTCTCCCTCTCGGTGCCGTGGATCCTCGTACAACAACCGTGGACGCTCCGGATACCAGGACGGCCACGTGTCCTCGGCTGTGGAGTTGGGCACAGAGATACACCAGGTCCATGCCAACGAGAAGGAGGAGATGCAGGAGCTAAACGTGAGGTTTGCAGGCTACATCGAAAAAGTACAGGCCCTTGAACAGAGGAACGCCCTGCTGATGGCCGAGCTGGCTGCGCTACAGGGCCGCTTCAAGGGAGGCCCCACCGGCATCGGAGAAGAGTACAACCTCAAGTTCAAGGAGATGAGGGAGCTGATCGAAGCCTTGACCAATGAGAAGGGAGCTGCTGATATCGAGAGGGGATacattgaggaggaggtggaggtgtggAGAATGAAACTGGAAGAGGAGCTAGCACTGAAAGaggaggcagagatgatCCTGAGGGAATTCCGTCAAGACGTTGACAATGCCACTCTGCAGAAGGCTGAGCTCGAGAAGAGTGTCGAACAGCTGGTGGCCGAGATTGAGTTCCTCAAGAAGTTGCATGACGAGGAAGTTGCCGACCTCATGAAGCAGATCGAGGACTCCAAGGTGACCACGGAACTCGACGGTGACCGCCCCGACCTCGCCGCCTACCTCCGCAACATGCGCGCCGAGATTGAGACTGTGGCGGCCAAGAACGTCCAGGAAGCCGAGAAGTGGTACAAGGGCAAGTTTGAAACCCTCAAAGAAGTCGCAGGCAAGAAAGAAGAGCAGATGAAGTCCATGAAAGAAGAGATCACCACCTTCCACAACCAGGTGACAGACCTCCAGAACCAGATCGACGGGCTGAGGGCGAGAAACGCGGCCCTGGAGCAACAGCTAGAGGACATGGAGATGGCCCACATGGATAAGGTTGGAGGCCTGGAGGGTATCATTGCTCAGCTGGAGCACCAGCTCTGCGAGACCAAGATGGAGATGGGCAAGTACCTGGCCGACTACCAAGAGCTGCTGCACATCAAGCTGAAGCTGGATGCTGAAATCGCAGTCTACAGGAAGctgctggagggagaggagagcaggctgGGGATCTCTGCAGGGAAACAACCAGAAGCTTAAGGAGCTGTCACAGAGGACCACCTCAATGTCCTGCAGTGTGGAGACTCACCAGCTGCCAGACGGTCTGCCTGAGCACCCCACGTTCTCCCCTACCACCAAGCTTGTCAACTCCCCCTACCTTCACTCCTCTGTTCCACCTACCCTCCCACCCTATCAGCCCCCCACCCTCCTTCTGCCCCCACCCACTGTCAACACCTAGCACATTCCATCACACCTTCCCAACCAGCCCACCCGTCAAcctcccaccacctcctcccAGTCCTGCCTGCCCCTGTCAAccccccaccacctcctcccAACCAGCCCACCCCTGTCAACCCCACCCCCTCATCCCAGCCCTGCCCGCCCCTGTcagccccccaccaccacctcctcccaaCCAGCCCACCCCTGTCAGCCCTTGTCATGTCACGCTGTGCTACGGTTAACTCGTCAAAACAACACATCACTTTtatttaaaatgtcatttaaacCCCCTTTACCCCACCTATTTTCATGTTATGTAACATAACTGAAGACGTTCACATAAATGTATACCAAGTACTACTTAATAAACAAAGCTTGACTTGAGTGCATTACA

Function

NR:

description
desmin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036936906.1 False 1929 mRNA 0.55 4 10958443 10961023
XM_036936907.1 True 1884 mRNA 0.55 3 10958443 10961023

Neighbor

gene id symbol gene type direction distance location
LOC110536951 cr032 coding downstream 98293 10850171 ~ 10860150 (-)
dym LOC106568469 coding downstream 109954 10636620 ~ 10848489 (-)
smad7 LOC106568470 coding downstream 335258 10576804 ~ 10623185 (-)
LOC110536943 LOC106568492 coding downstream 788768 10136018 ~ 10169675 (-)
LOC110536942 s1pr3 coding downstream 868311 10083932 ~ 10090132 (-)
LOC110536954 LOC106568457 coding upstream 8917 10969940 ~ 10991575 (-)
LOC110536955 LOC106568458 coding upstream 85625 11046648 ~ 11051785 (-)
LOC110536956 LOC106568459 coding upstream 251649 11212672 ~ 11231102 (-)
LOC110536958 LOC106568460 coding upstream 294136 11255159 ~ 11320076 (-)
LOC118937658 NA coding upstream 443974 11404997 ~ 11406085 (-)
G1037141 NA non-coding downstream 4818 10947978 ~ 10953625 (-)
G1037142 NA non-coding downstream 8796 10948735 ~ 10949647 (-)
G1037140 NA non-coding downstream 9804 10946361 ~ 10948639 (-)
G1037116 NA non-coding downstream 95497 10862739 ~ 10862946 (-)
G1037113 NA non-coding downstream 103098 10854973 ~ 10855345 (-)
G1037156 NA non-coding upstream 13064 10974087 ~ 10974869 (-)
G1037205 NA non-coding upstream 126637 11087660 ~ 11088001 (-)
G1037206 NA non-coding upstream 128247 11089270 ~ 11094600 (-)
G1037215 NA non-coding upstream 141342 11102365 ~ 11102565 (-)
G1037224 NA non-coding upstream 152766 11113789 ~ 11114826 (-)
sema4d sema4d other downstream 1048612 9901109 ~ 9983793 (-)
LOC110536932 NA other downstream 1269401 9684834 ~ 9696461 (-)
G1035717 NA other downstream 1410308 9533500 ~ 9548135 (-)
hcn1 hcn1 other downstream 1915763 9018507 ~ 9206417 (-)
G1037216 NA other upstream 142061 11103084 ~ 11103448 (-)
G1037217 NA other upstream 144912 11105935 ~ 11106320 (-)
G1038258 NA other upstream 645328 11606351 ~ 11615943 (-)
G1038295 NA other upstream 705964 11666987 ~ 11738777 (-)

Expression


Co-expression Network