LOC110536955 (LOC106568458)


Basic Information

Item Value
gene id LOC110536955
gene name LOC106568458
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 11046648 ~ 11051785 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021622637.2
AGCGGTAGGAAACCCTTGCCCGCTGTCACTTTGTCAGTTCAGTCTGTTCTCTAGTCCATGCATGGAAGTGGAATTGCTAAGGAGACGAGGGAATCCCCCTATAGTGTCGCCTCACTCCTGATGAATTTGCATCAACGTTATTACCAAGCTTGTTTTTTATCGGTCTCAGTCTGCCTGTTCCATTCGCTGCGTCCACAAGCATGGCTTGGAGTGAAGTATAGCGCCACATCATCTCGGACTGTCAACCCGTGAAGAATACACAACTGATGCTGTACAACAAACGGTGTATTTACCAGAAGAAATTCATCAGAGGAACCAGGCAACCCACCAAGTGACTTCGACAATATGGCATTGAGCGGGACGCTTTTGCCATCCATATCCACATTTGCAAGCGGCCCGAATGTCAAGAATAAATCCATGGGACATGCGAATTTAAGATGGAAGGAGGATATCTCCACTGGCATGACCAAGAAAGAGCCTGAAGATCTGGACCTGCTAGACTATGACTTTATCTTGTCCAACACTATGCTACAACAGCAGGCTGAGGCCATGGCAGCAAGCGGGTCCCAGAACCTGTCCCCTTCCCCGGGCTCCTACTCCTCCTACCAGCTCCCCTCTCCCCAGGACTCTGCCCACAGTGACATGCTGTACACCATCCCTGACATCAGCGACGTGTCCCCCTCTGGGGGGTTTGTGGCCGAACTGATGAGGCCTGAATTGGACCCAGCATACCTCCACCCCACCAGCCTCCATGGCAAGTTTGTGGTGAAGACCACCATGGATATGGCAGAATACGGCCAAAGCATTAATGTGATTAGTAAGGCCGGTGTTGGTGTCAGTGCTGCCACGGACCCCTCCTCCTTGCCTTTTGTTTGTCATATGATAAAGCAGGAGAACCCCAGCATGTGCAACATCACCCAACCCATGGATCTCCACCTTGGGGGGGTGAACTCACACTCCCAGCCCAGAACTGGACAGAGGCCTCACCTCGACCCCCACGGTTTCTCCCCAGGGGGGTGTCCTATGACAGCCAGTCGGTCAGCTTCATCTCTGTCTCCAGACCACCACCCTTCCAGCCAGGTGTTATCCCACCCCCAGATCCCTCTGCCTGGCCAGGGCTACCACCACAGCTCTCCGACAAGCTACTCGCCCTTCCCTCAACAGCCTGGGTCTCTACGGTACCAAGAGCTCATGTCCCCGGGCGGAGACTGTCTACCGGAGGAGCCCAAACCTAAACGCGGCCGGCGCTCCTGGCCCAGGAAGAGAATCGCCACACACACGTGTGACTACGCCGGCTGTGGGAAAACCTACACCAAGAGCTCCCACCTCAAAGCACATCACCGAACGCACACAGgagagaagccttattgcTGTGActgggagggctgtggctggaAGTTTGCCCGTTCAGACGAGCTCACACGGCACTACAGGAAACACACGGGGCATCGCCCCTTCCAGTGTGCCAAGTGTGACAGGGCCTTCTCAAGGTCTGACCACCTGGCTCTACACATGAAGAGACACCTATGAGACACTCACTGGACACCATGGACCAATACTAAAATACTATAAATATTATTAAACAGCGACCTGAACTTGTGACTTACAAATAAACATTGCCTTCTAGCCATCCATTGTCAAAGCACCAATACAAGCTATGTGTTTCCTGGTAGTGTTACACTCTCAAGGGTCCAACCCTATGACTAAAGACTGTTCTTTGTCCATCTATGGGCTTGTGATCTGACATTTGACAAGACCCCTCAGAACAACTCCTTTTGTGGGACAAAACTGGAATCGCTCATCTATTTATCGACAAAACCTGGAGGACTAGGTGCCAACGTGTGACTGGAAATGTATTAGCAGAGATTTACAGGGACAGCCCTAGTCACTAAGCGACCAccgttttgttttttttattgtctGAAGATTATGATACTTTTTCCTAAAATGTAAATTGCCTTTCACATACTAATGGGGGAGGAATCAGAAAGATCACATTCTAACGGGGGAGGAATCAGAAAGATCACATTCTAACGGGGGAGGAATCAGAAAGATCACATACTAATGGGGGAGGAATCAGAAAGATCACATACTAACGGGGGAGGAATCAGAAAGATCACATACTAACGGGGGAGGAATCAGAAAGATCACATACTAACGGGGGAGGAATCAGAAAGATCACATACTAACGGGGGAGGAATCAGAAAGATTACATACTAACGGGGGAGGAATCAGAAAGATCACATACTAACGGGGGAGGAATCAGAAAGATCACATACTAACGGGGGAGGAATCAGAAAGATCACATACTAACGGGGGAGGAATCAGAAAGATCACATACTAACGGGGGAGGAATCAGAAAGATCACATACTAACGGGGGAGGAATCGGAAAGATCACATACAGAAAGATCACATACTAACGGGGGAGGAATCAGAAAGATCACATACTAACGGGGGAGGAATCAGAAAGATCACATACTAACGGGGGAGGAATCAGAAAGATCACATACTAACGGGGGAGGAATCAGAAAGATCACATACTAACGGGGGAGGAATCAGAAAGATCACATACTAACGGGGGAGGAATCAAAAAGATCACATACTAACGGGAGGAATCAGAAAGATCACATACTAACGGGGGAGGAATCAGAAAGATCACATACTAACGGGGGAGGAATCAGAAAGATCACATACTAACGGGGGAGGAATCAGAAAGATCACATACTAACGGGGGAGGAATCAGAAAGATTACATACTAACGGGGGAGGAATCAGAAAGATTACATACTAACGGGGGAGGAATCGGAAAGATCACATACTAACGGAGGAATCAGAAAGATTACATACTAACGGGGGAGGAATCAGAAAGATTACATACTAACGGGGGAGGAATCAGAAAGATTACATACTAACGGGGGAGGAATCAGAAAGATTACATACTAACGGGGGAGGAATCAGAAAGATTACATACTAACGGGGGAGGAATCAGAAAGATCACTACTGGAATTATTTGCATTATAAGTCAAAACTTTCTCAGAGCAAGCTCAACTTGCCCGACTGCTATAAATGCCATACATTATCTGTCTTTCAGTAAAATAATGGGGAGGAACCAGAAAGATCAGTTTCAGGCTACTGGAAGTCTTAGCAGTT

Function

NR:

description
Krueppel-like factor 4

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021622637.2 True 3150 mRNA 0.48 5 11046648 11051785

Neighbor

gene id symbol gene type direction distance location
LOC110536954 LOC106568457 coding downstream 55073 10969940 ~ 10991575 (-)
LOC110536953 LOC106561351 coding downstream 85625 10958443 ~ 10961023 (-)
LOC110536951 cr032 coding downstream 186498 10850171 ~ 10860150 (-)
dym LOC106568469 coding downstream 198159 10636620 ~ 10848489 (-)
smad7 LOC106568470 coding downstream 423463 10576804 ~ 10623185 (-)
LOC110536956 LOC106568459 coding upstream 160887 11212672 ~ 11231102 (-)
LOC110536958 LOC106568460 coding upstream 203374 11255159 ~ 11320076 (-)
LOC118937658 NA coding upstream 353212 11404997 ~ 11406085 (-)
LOC110536959 LOC106568452 coding upstream 372472 11424257 ~ 11457254 (-)
LOC118937665 NA coding upstream 463602 11515387 ~ 11516091 (-)
G1037156 NA non-coding downstream 71779 10974087 ~ 10974869 (-)
G1037141 NA non-coding downstream 93023 10947978 ~ 10953625 (-)
G1037142 NA non-coding downstream 97001 10948735 ~ 10949647 (-)
G1037140 NA non-coding downstream 98009 10946361 ~ 10948639 (-)
G1037116 NA non-coding downstream 183702 10862739 ~ 10862946 (-)
G1037205 NA non-coding upstream 35875 11087660 ~ 11088001 (-)
G1037206 NA non-coding upstream 37485 11089270 ~ 11094600 (-)
G1037215 NA non-coding upstream 50580 11102365 ~ 11102565 (-)
G1037224 NA non-coding upstream 62004 11113789 ~ 11114826 (-)
G1037235 NA non-coding upstream 68823 11120608 ~ 11121030 (-)
sema4d sema4d other downstream 1136817 9901109 ~ 9983793 (-)
LOC110536932 NA other downstream 1357606 9684834 ~ 9696461 (-)
G1035717 NA other downstream 1498513 9533500 ~ 9548135 (-)
hcn1 hcn1 other downstream 2003968 9018507 ~ 9206417 (-)
G1037216 NA other upstream 51299 11103084 ~ 11103448 (-)
G1037217 NA other upstream 54150 11105935 ~ 11106320 (-)
G1038258 NA other upstream 554566 11606351 ~ 11615943 (-)
G1038295 NA other upstream 615202 11666987 ~ 11738777 (-)

Expression


Co-expression Network