mmp25a (LOC106600705)


Basic Information

Item Value
gene id mmp25a
gene name LOC106600705
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 60931123 ~ 60965921 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021626048.2
TGTTACCGTCTGTGTTGTGGGTTCTGCTGAACTCATGTGGGTATGTGTATGACACAGGGTCAGTTCTCTTGCCGGTTTGCCGTCGCCTCTGTACGCCGATGACATCATCGTTTGGCATCAATTTGGACATACTCTATGAAGACGTTTGTACTCTTGAACTTATCATCCCCGGATCAGAGGCGGAGTATGGGTTCGATGCAGTGTGGGACAGCTCCTTTTCAGGATGGGGTATATAGAGCAATATACAGGACAAGCTGTTTACATGTCCACCTTCTAAACAAGTGCTCTGCAGAGTGAGAGGAAACAaaaaagtgtatgtgtgtgtgtgtttaccagaatGGAGTGGATGAGAAAATGAACCCAGAGAAAAAGGGTGGGGTGGGGCTGCTGACCATAAGTGCATCCTattgatctatacagtatgtccATCCATGCGCAGGCCCAGCCTAGTCTCAGGGGATGTTGCAAGAGAAAAACAGACCGAGACAGAGCTCTGCTAAAGAAGCATCTTCAACTATTCTGAGGAACTGTTCTCCCCATCTTGTGCTTTCTCTGTTTACTCAGGAAAAAGGTTGTTtatatctatttatttatttgattcatCAGAGTTATCCAGAGAGCTGCAAAGGTTTCAGGTTGAGTGTCCACCGAGAAGCCAACGGTTATGAGTCAAGCATTTGACTGCTCAAGTGGTCACACACTCTGTGGAATGAAACGGACATCCTGTGTAGCCCATCTTTACGAGAGGTCGTGGTGAGCAAACGCATTTTCAGGTTAGTTATGTGTTATCATCGTCTGCTCTTGGTGAGCGGAGCAGGGCTCCTTCTAACAATCTCCATCGGGCTGTGTGCCCCAACGGCTGACCAGTACTCTCGTGGAGTGgaCTGGCTGAGTCGGTATGGGTACCTGCCCCCTCCGGACCCCCGCACAGAGAGGCTCCAGACCAGGGAGGGCATCCAGAAAGCTCTCCGCCAGATGCAGAGGTTTGCTGGGCTAGAGGAGACAGGAACACTGGacCATGCTACTCTTTCTTTGATGAAGACCCCTCGCTGTTCCCTGCCTGACATTGTCGGAACGGAAGAcctgaggaagagaaggaggaagaggaaaaagAGATATGCTTTGACCGGGCTGAGCTGGAAAAAGAATGATATCACCTGGAGTGTGCTCAgctacccctccccctccctgtccccctccctccaccccgaACTGGTGGATCTCATCCTCACCTATGCCCTCCGTGTGTGGAGCAACCCCACCCCCCTCAACTTCCAACTTCTTCGCCCCTCCCGGGACCACCCCAACCAAGAGGGGGACTTCAGGGTGTCCTTTCCCAGCTCCTACCACGAGGACGGGTACCCCTTCGATGGCAGAGGGGGCACCCTGGCTCACGCGTTCTTCCCCGGGACGGCGGACATGGCGGGGGACACCCACTTTGACAATGGGGAGAGCTGGAGTTACGGGTATGGAGatgaCATTGGCACCACTGATCTCTTCACGGTAGCAGTGCATGAGTTTGGCCACGCCCTGGGCCTCTCACATACCTCTTCCAATCCCTCCATCATGAGGCCATACTACCAGGGGACTGTGGGGGACATCCAGAGCTACACACTACCTACAGATGACAGGCTGGGAATACAGGCTATATACgGAAAGAGAAGAAGGTCTGCCACGCATCCCACTCCGGCCCCAACCACTCCCAACCTACCTTTCCTGCCCAGTCCTCCATCCCCAAGACTAACACCACACCCAGACCCTGCTCTGCCAGATCGCTGTGAGGGGAAATATGATGCCATTGCCAACATCAGAGGAGAAGTCTTCTTCTTCAAGGgtgcTTTTTTCTGGCGTGCTCAGCAGTGGGGTTCTCTGGTGTCTTTCAACCCAGCATTGATCCACAACTTCTGGGTTGGGCTCCCCCTAAGGCTGGACCGGATCGACACAGTCTATGAAAGGAGTGACGGACACATCATCTTCTTCATTGGAGCCCAGTACTGGATGTTCAAAGACAGGGCCTCTTTGCCTGGGTACCCACGCTCCCTAGAGGAATGGGGCATGCATACCATGGAGGGTCGGCCACTGGAGAGGGTGGAGGCGGTGTTTGTGTGGGCACACAATGGGAAAACGTACGTGTTCAGCGGAGGGGAGTTCTGGAGATTTGACGAAGGGGGGCAGGACAGGAAACTGGAGGGGGGCTACCCCAAAATGGCCTCCCTCTGGACAGGGGTGCCCTCTGACCCAGATGACATCATCAGCTGGGGAGACGGAGATGCTTATTTCTTCAAGGACACCTCCTACTGGGTGCTAAAGAGAGGGGGGTTGGACCAGGGAAGTATCACTCCAAAATCCACAGCAGTGGATTGGATGAAATGTAAGGTTGGTGGACCAACTCCCACCCACTTACCCAAGATGCCTCACCCTACAGGCAGAGACTGTGACCGGAGCAGAACTGTAACAATACAAGCATCTTATTGGCTAATCATAGTGTCTGTTTCTGTTTTGTTGTTATTTTCTGTTTCTGTATGTTAGTATTCACtgttttcaatgtttttttttctctgtcaACTACAATGATTTGGTGAAAATTAAATAGATAAAAAGACAGACAGCAAGCAAGGTTCAGGAGTTGTGATGATTTCAGTGCTCAGAGGACTATAAGACATTTACAGTGTATTTAAGTATGTCCATCTGGTCATTAGGTcttgtgatgtactgtatgtcaccTGATATGATGTATGTTATCTGTACACCAAGTATGCCTGTCCTTTGTTGCAAAGACAATTTCCGTATGGGATATTAAATtatactattcta
>TU1245870
GGCGGGGGACACCCACTTTGACAATGGGGAGAGCTGGAGTTACGGGTATGGAGatgaCATTGGCACCACTGATCTCTTCACGGTAGCAGTGCATGAGTTTGGCCACGCCCTGGGCCTCTCACATACCTCTTCCAATCCCTCCATCATGAGGCCATACTACCAGGGGACTGTGGGGGACATCCAGAGCTACACACTACCTACAGATGACAGGCTGGGAATACAGGCTATATACgGAAAGAGAAGAAGGTCTGCCACGCATCCCACTCCGGCCCCAACCACTCCCAACCTACCTTTCCTGCCCAGTCCTCCATCCCCAAGACTAACACCACACCCAGACCCTGCTCTGCCAGATCGCTGTGAGGGGAAATATGATGCCATTGCCAACATCAGAGGAGAAGTCTTCTTCTTCAAGGgtgcTTTTTTCTGGCGTGCTCAGCAGTGGGGTTCTCTGGTGTCTTTCAACCCAGCATTGATCCACAACTTCTGGGTTGGGCTCCCCCTAAGGCTGGACCGGATCGACACAGTCTATGAAAGGAGTGACGGACACATCATCTTCTTCATTGGAGCCCAGTACTGGATGTTCAAAGACAGGGCCTCTTTGCCTGGGTACCCACGCTCCCTAGAGGAATGGGGCATGCATACCATGGAGGGTCGGCCACTGGAGAGGGTGGAGGCGGTGTTTGTGTGGGCACACAATGGGAAAACGTACGTGTTCAGCGGAGGGGAGTTCTGGAGATTTGACGAAGGGGGGCAGGACAGGAAACTGGAGGGGGGCTACCCCAAAATGGCCTCCCTCTGGACAGGGGTGCCCTCTGACCCAGATGACATCATCAGCTGGGGAGACGGAGATGCTTATTTCTTCAAGGACACCTCCTACTGGGTGCTAAAGAGAGGGGGGTTGGACCAGGGAAGTATCACTCCAAAATCCACAGCAGTGGATTGGATGAAATGTAAGGTTGGTGGACCAACTCCCACCCACTTACCCAAGATGCCTCACCCTACAGGCAGAGACTGTGACCGGAGCAGAACTGTAACAATACAAGCATCTTATTGGCTAATCATAGTGT

Function

NR:

description
matrix metalloproteinase-25-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021626048.2 False 2814 mRNA 0.51 10 60931123 60965921
TU1245870 True 1067 TUCP 0.54 7 60954700 60965595

Neighbor

gene id symbol gene type direction distance location
bcl2l12 bcl2l12 coding upstream 37699 60886071 ~ 60893424 (+)
LOC118937692 NA coding upstream 86975 60842691 ~ 60844148 (+)
LOC110538924 LOC106600724 coding upstream 99023 60827444 ~ 60832100 (+)
LOC110539099 nosip coding upstream 117694 60808979 ~ 60813429 (+)
LOC110539110 LOC106600715 coding upstream 126010 60798241 ~ 60805113 (+)
LOC110539100 NA coding downstream 71803 61037724 ~ 61041909 (+)
LOC118937694 NA coding downstream 113647 61079568 ~ 61079848 (+)
LOC118937693 NA coding downstream 129870 61095791 ~ 61097619 (+)
LOC110539103 NA coding downstream 150777 61116698 ~ 61126203 (+)
LOC118937695 NA coding downstream 197912 61163833 ~ 61164098 (+)
G1095470 NA non-coding upstream 13012 60917873 ~ 60918111 (+)
G1095469 NA non-coding upstream 14089 60916832 ~ 60917034 (+)
G1095466 NA non-coding upstream 14926 60915888 ~ 60916197 (+)
G1095462 NA non-coding upstream 19019 60911891 ~ 60912104 (+)
G1095460 NA non-coding upstream 19464 60906339 ~ 60911659 (+)
G1095501 NA non-coding downstream 304 60966225 ~ 60966508 (+)
G1095504 NA non-coding downstream 5870 60971791 ~ 60973193 (+)
G1095509 NA non-coding downstream 7378 60973299 ~ 60973845 (+)
G1095506 NA non-coding downstream 24728 60990649 ~ 60991038 (+)
G1095540 NA non-coding downstream 71818 61037739 ~ 61352345 (+)
G1095209 NA other upstream 112226 60816491 ~ 60818897 (+)
LOC110539079 LOC106600700 other upstream 217111 60696612 ~ 60777061 (+)
G1095244 LOC108238713 other upstream 545150 60385664 ~ 60385973 (+)
G1094218 LOC100380853 other upstream 897103 60031003 ~ 60034020 (+)
G1093909 NA other upstream 1388520 59541558 ~ 59542603 (+)
LOC118937701 LOC100136295 other downstream 1480583 62441706 ~ 62448515 (+)
LOC100305204 hebp2 other downstream 2336570 63302491 ~ 63334694 (+)
LOC110538933 LOC106600901 other downstream 2922175 63888086 ~ 63908673 (+)
G1097063 NA other downstream 3170437 64136358 ~ 64136704 (+)
G1095493 NA non-coding upstream 4023 60950108 ~ 60950677 (+)
G1095492 NA non-coding upstream 5150 60949333 ~ 60949550 (+)
G1095489 NA non-coding upstream 10772 60943714 ~ 60943928 (+)
G1095488 NA non-coding upstream 11707 60942720 ~ 60942993 (+)
G1095486 NA non-coding upstream 14122 60940293 ~ 60940578 (+)

Expression


Co-expression Network