LOC110538043 (ifn1)


Basic Information

Item Value
gene id LOC110538043
gene name ifn1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 65755903 ~ 65760060 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021624602.2
TTGAGAGATGTGGGTATTGACGCTGACGTCTCCCATTCACTTTTCATTTGAAGCGCAACAGCAGAAGACTACGGAACAACATTTCGGACTAACTTTGAACGAAACCCACTAAATGAATGTGTTATATGGCTACATCTCTTTAAAAGTGTGGGTTTTATTTCGACTCCGACGATTTTGTTATCAGACTTTTTTCCTCGGTTCACGCGAAGTTATTAGCAGTTGAAAGCAAAGCTCGCGAATAGCCTATTCTCGCTATAGTAATAGTCTAGCCGATATCTAGATTGAATAATATTTTATTGTGGTTCAACTATAATTTAAAGCTGTTTTCAATGAGAATGTGTATAGATTTACTTGGATTTGTTCGTCCAGGAGACGGGGCAGGCATGGAATTCCAAGTGCTACATGTGCTAGTCCGGAAAATGAAAGTCCCCGCCTCCGTATGCAGAGCGTGTGTCATTGCTGTGACTGGATCCGACACCACTACGGTCACTTGAGCGCAGAATACCTTTCCCTGCTGGACCAGATGGGAGGAGATATCACAAAACAGAATGCCCCAGTCCTTTTCCCAACATCACTTTACAGACACATAGATGATGCTGAGTTTGAGGACAAAGTCATATTCCTGAAAGAGACCATCTATCAAATCACAAAACTGTTTGATGGGAATATGAAATCTGTCACCTGGGACAAGAAAAACCTGGACGATTTCCTCAACATTCTAGAACGCCAATTGGAGAACCTTAATTCCTGTGTATCACCTGCCATGAAACCTGAGAGGAGACTGAAACGGTACTTCAAGAAGTTGAATAGTAAGGTTCTGAGAAAAATGAACTACAGTGCACAGGCGTGGGAGCTCATCAGGAAAGAGATGAAACGTCATCTGCAAAGATTGGATATCCTTGCAGCACAGATGTACTGATCATCCAGACTCATTTCAGAAGCTACGCCCTTACCAGTTTATAAAGCATGAATTTAATCATGTGGGACCCTGTCAGTCTATTTATTATATTTAAATCCATAaattattgttttttatttttataatttattatttatattttgtatTTCCCTTTTGTACATGTGTTGAACTGAACTGTATTGCCGGTCTACTTGAAAAACCAGTGAAAAAATAATATTGCAAATGTGAATAAAAACGTATCTTGTACAAA
>XM_021624600.2
ATGTATACAATGCAGAGCTGGAGTTGTATTTTTCTTATTATTTGCAGTATGCAGAGCGTGTGTCATTGCTGTGACTGGATCCGACACCACTACGGTCACTTGAGCGCAGAATACCTTTCCCTGCTGGACCAGATGGGAGGAGATATCACAAAACAGAATGCCCCAGTCCTTTTCCCAACATCACTTTACAGACACATAGATGATGCTGAGTTTGAGGACAAAGTCATATTCCTGAAAGAGACCATCTATCAAATCACAAAACTGTTTGATGGGAATATGAAATCTGTCACCTGGGACAAGAAAAACCTGGACGATTTCCTCAACATTCTAGAACGCCAATTGGAGAACCTTAATTCCTGTGTATCACCTGCCATGAAACCTGAGAGGAGACTGAAACGGTACTTCAAGAAGTTGAATAGTAAGGTTCTGAGAAAAATGAACTACAGTGCACAGGCGTGGGAGCTCATCAGGAAAGAGATGAAACGTCATCTGCAAAGATTGGATATCCTTGCAGCACAGATGTACTGATCATCCAGACTCATTTCAGAAGCTACGCCCTTACCAGTTTATAAAGCATGAATTTAATCATGTGGGACCCTGTCAGTCTATTTATTATATTTAAATCCATAaattattgttttttatttttataatttattatttatattttgtatTTCCCTTTTGTACATGTGTTGAACTGAACTGTATTGCCGGTCTACTTGAAAAACCAGTGAAAAAATAATATTGCAAATGTGAATAAAAACGTATCTTGTACAAA

Function

NR:

description
interferon a3-like isoform X1

GO:

id name namespace
GO:0051607 defense response to virus biological_process
GO:0005615 extracellular space cellular_component
GO:0005125 cytokine activity molecular_function
GO:0005126 cytokine receptor binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021624602.2 False 1169 mRNA 0.39 6 65755903 65760060
XM_021624600.2 True 778 mRNA 0.38 5 65756467 65760060

Neighbor

gene id symbol gene type direction distance location
LOC110511235 ifn1 coding upstream 10346 65741411 ~ 65745557 (+)
LOC110517168 ifn1 coding upstream 25278 65726480 ~ 65730625 (+)
ifn1 ifn1 coding upstream 45328 65706431 ~ 65710575 (+)
ifnphi1 LOC106600969 coding upstream 79325 65675000 ~ 65676578 (+)
LOC110538937 LOC106600965 coding upstream 85608 65669302 ~ 65670295 (+)
LOC110538049 LOC106600867 coding downstream 31218 65791278 ~ 65793249 (+)
LOC110538052 ifn1 coding downstream 42430 65802490 ~ 65807617 (+)
LOC110539157 LOC106596190 coding downstream 58910 65818970 ~ 65820338 (+)
LOC110539158 LOC106600867 coding downstream 73563 65833623 ~ 65835321 (+)
LOC110538942 ifne coding downstream 251147 66011207 ~ 66012308 (+)
G1100821 NA non-coding upstream 138494 65609578 ~ 65617409 (+)
G1100800 NA non-coding upstream 158235 65575619 ~ 65597668 (+)
G1100472 NA non-coding upstream 223032 65524903 ~ 65532871 (+)
G1100443 NA non-coding upstream 305334 65450229 ~ 65450569 (+)
G1100441 NA non-coding upstream 312763 65442899 ~ 65443140 (+)
G1101009 NA non-coding downstream 99760 65859820 ~ 65971064 (+)
G1101013 NA non-coding downstream 105472 65865532 ~ 65893566 (+)
G1101016 NA non-coding downstream 114311 65874371 ~ 65928968 (+)
G1101312 NA non-coding downstream 418870 66178930 ~ 66179473 (+)
G1100432 NA other upstream 322446 65433140 ~ 65433457 (+)
si:dkey-110g7.8 LOC106600891 other upstream 1379689 64369958 ~ 64376356 (+)
G1097122 NA other upstream 1500839 64254612 ~ 64255064 (+)
G1097116 NA other upstream 1527219 64228001 ~ 64228684 (+)
G1097063 NA other upstream 1619199 64136358 ~ 64136704 (+)
LOC110538063 abi1 other downstream 389149 66148710 ~ 66168256 (+)
LOC110538072 psd3 other downstream 901904 66661875 ~ 66670815 (+)
G1101805 NA other downstream 964601 66724661 ~ 66822261 (+)
G1102021 NA other downstream 1298675 67058735 ~ 67059407 (+)
G1102115 NA other downstream 1465292 67225352 ~ 67225799 (+)

Expression


Co-expression Network