LOC110538049 (LOC106600867)


Basic Information

Item Value
gene id LOC110538049
gene name LOC106600867
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 65791278 ~ 65793249 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021624611.2
ATGAAAAGGTGTTGCGTTTTCAAACATGAAATACTTTGGATTTCGATGTGAAAGGCCAAACTAAATTTGTTCTATATGGTGATATTTATTTAGGCCATAGTCCGATCGATtcacatgtttatttttttcatcaaaaTAATCCTGGTTGAAAGGTCAAAATGTCATGATAAAATAGCAAATAGCTCAAGATGTAACAATTAGTCGAGCGATGCACCTGTCCTTTCGATGCATTTTCTCCACACGTACAACAACACTCAGGTATGAAAGTGTAAGGGAACTTCCACCTTTCACTTTTGGAACACCTTGCAGACTCGTTGTATAAAGGATCGACACAGGTTGGAGCATGGCAGAACTTGGGTGGCAGAACTGGTATTGATCACTTTATCTCTTTATCCGTTGCGGAAAACTTACCTTGTCGGAATTATACGAAGAAGTCTATCTTTCGGAAGTGCATCAACGTTGATAGCGGACAGACCGAGAACTACAGTAGACCTACGCTAAAATGGGTTCAATCAGCTTTTGGATGTGCTTGGTCATGACGATTTGCACCTGGAATAAAACCATCGGATGCACATGGATGAAGACACTGCCTCGGTCTCCGAGCATGTTCCAAGTGTTCAGCAACAACACCATAACGATGCTTCAGAAAATGGGTCATGAAGTCTCTCGAGGACCTCAGATCACTTTCCCTGACAAACAATACAGACAAGTCAATAATTTCAAGTCTGACGAACAGATTGCCTTCATTTCGCATACTCTGAACGCTATAAAGAAATTGTACAGCAGTGGTAAATATGAGTCCACCGCCTGGGACCAGAAAGGAGTTGACAAGTTTATGAATGACCTCTATCGCCAGACCTCGGAGCTGGACCAATGCGTAAAGGCTATGAAAACTAGACTATCAAAATCTGTCAACAGAGTGAACAAAAAGATGAGCCTTCACTTCAAGTTCCTGAAGCATTACTTGAAACGCGAGGATTACAGCGCAATCGGCTGGGAAGACATAAGGACAGTGGTGCTGGCACACCTACAAAGACTAGACACAACATTAAGTAGCCAATGAGCGTTAT

Function

NR:

description
interferon a3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021624611.2 True 1070 mRNA 0.42 5 65791278 65793249

Neighbor

gene id symbol gene type direction distance location
LOC110538043 ifn1 coding upstream 31218 65755903 ~ 65760060 (+)
LOC110511235 ifn1 coding upstream 45721 65741411 ~ 65745557 (+)
LOC110517168 ifn1 coding upstream 60653 65726480 ~ 65730625 (+)
ifn1 ifn1 coding upstream 80703 65706431 ~ 65710575 (+)
ifnphi1 LOC106600969 coding upstream 114700 65675000 ~ 65676578 (+)
LOC110538052 ifn1 coding downstream 9241 65802490 ~ 65807617 (+)
LOC110539157 LOC106596190 coding downstream 25721 65818970 ~ 65820338 (+)
LOC110539158 LOC106600867 coding downstream 40374 65833623 ~ 65835321 (+)
LOC110538942 ifne coding downstream 217958 66011207 ~ 66012308 (+)
LOC110538062 LOC106600863 coding downstream 312094 66105343 ~ 66142689 (+)
G1100821 NA non-coding upstream 173869 65609578 ~ 65617409 (+)
G1100800 NA non-coding upstream 193610 65575619 ~ 65597668 (+)
G1100472 NA non-coding upstream 258407 65524903 ~ 65532871 (+)
G1100443 NA non-coding upstream 340709 65450229 ~ 65450569 (+)
G1100441 NA non-coding upstream 348138 65442899 ~ 65443140 (+)
G1101009 NA non-coding downstream 66571 65859820 ~ 65971064 (+)
G1101013 NA non-coding downstream 72283 65865532 ~ 65893566 (+)
G1101016 NA non-coding downstream 81122 65874371 ~ 65928968 (+)
G1101312 NA non-coding downstream 385681 66178930 ~ 66179473 (+)
G1100432 NA other upstream 357821 65433140 ~ 65433457 (+)
si:dkey-110g7.8 LOC106600891 other upstream 1415064 64369958 ~ 64376356 (+)
G1097122 NA other upstream 1536214 64254612 ~ 64255064 (+)
G1097116 NA other upstream 1562594 64228001 ~ 64228684 (+)
G1097063 NA other upstream 1654574 64136358 ~ 64136704 (+)
LOC110538063 abi1 other downstream 355960 66148710 ~ 66168256 (+)
LOC110538072 psd3 other downstream 868715 66661875 ~ 66670815 (+)
G1101805 NA other downstream 931412 66724661 ~ 66822261 (+)
G1102021 NA other downstream 1265486 67058735 ~ 67059407 (+)
G1102115 NA other downstream 1432103 67225352 ~ 67225799 (+)

Expression


Co-expression Network