LOC110538064


Basic Information

Item Value
gene id LOC110538064
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 66147126 ~ 66148605 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021624632.2
AGCATATCTCGATAGACTAAGAATAACTTGAAGAGGACAACGATGGGGCTAGGGACATGATGATCCCTTTAAAACACATGTCCCTGTTGCTACTCCTCCTCCagatcctctctttctccctactgTCTACCTATGAGGCCCCTGAAGACAAGGAGGACATTTTTGCCAGTAGGGCCTGTCCTGCCTTCCTTGTGTTTGACAATGCTGCCTATTTGGTTGACATGACCGTAGAGCTGCCCTGTCACTGTAAGCCTGAGGAGGCCCACTCTGTGGTGTGGTACTACCAGAAAAAGCTGGGCAGCCCGGACACCAGGGCCCTCACTGACTTCCAGGGCACCTCTGTGGTGGACTCATCCAAAGTGGGCCGGGGAGGGGACCTCCGGAGTAGGTTCTCCATCCGCCTCTTCAGCCTGCTCATCTTTAGGGCCCAGGAGGAAGACTCGGGCCACTACCTCTGTGGGACGACCAAGGGGGACTTCTTCTATGGTTATGACGTGGACGTCCAAGAGGCTCACAGGGTGTCCTTTCCCTGGAGTCGTGCCCAGAGACGGGGGAGAGCAGCAGCAGTGGCGGCGAGGGCAGCTTCGAGATCCAACCAGGATCTTCCACTCTACCAGGTGTTCACCAGCTTCTGGCCGTGGTCTGTGTGCGACCGCTGTGGCGTGCGGGGTGAGCAGACCCGCGTAGGACTCTGCTACGTGAAGAGCGACTACCTCCACGTGCGCTACAGGTGGACATCTCAGACGGTGGCCTCTTGCGGCTCCTCCGCTGTACCCCAACGGTTTGGCCTCACCCAGACCAACCACCAGGGGGCAGAGCTGGGGGTGCGGAGCTGCCAGGTCCCCTGCCCCCCCAAGTCCATCACCCAGCCAGAACACCAGGCCCTGCTGGAGTTCCTGGGCTACAACGAGCCAGCAGCTAATGGGGTCCCTgtctactaccacaaccacccaGTGGACACCCCACTCATCCTCTCCTGCCCTGGAGCCAAACCTCAGCATGCGGTAGCCTGGGACCAAGGCTCTAGGCCTCTGTATCGCTCCCAGTACATGGAGGGTCTGAACGTGACCTTCCGTCTGTTCATAGACACAGGCCACCACCTGCACTTCAGCCCAGCAACACAGGACGACAGAGGGTCCTACTACTGCTGGATCCAGGGGAAGAGGGCTGCTGAGATCAGGCTGGGGGTTTACTACCGTCTGGGCCGCAAGCGTCTGCTCTCTGACCCTGAGTCGCTCTATGCCCTGAGGATTATTCTCCTCTGCTACGGGGGGATGACTGGGGTATTTGTTTTGATAGTGCTGTTGAAGTATACTTGGCGCACAGTAAGACCAAAAGTAGCCAAATACTAGAAATCTGCTTGCCACTTGATGAGATTTATTTTTGAGTTATTTTGAACAAATCATTTTGTGAAATGTATGATTGTCTTTACGTCCAATTTGTCTAAATCTTAGCTAAAGAAATAAAGTGTGTTAATAAA

Function

NR:

description
Ig-like V-type domain-containing protein FAM187A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021624632.2 True 1480 mRNA 0.55 1 66147126 66148605

Neighbor

gene id symbol gene type direction distance location
LOC110538065 LOC106600861 coding upstream 205 66142827 ~ 66146921 (+)
LOC110538062 LOC106600863 coding upstream 4437 66105343 ~ 66142689 (+)
LOC110538942 ifne coding upstream 134818 66011207 ~ 66012308 (+)
LOC110539158 LOC106600867 coding upstream 311805 65833623 ~ 65835321 (+)
LOC110539157 LOC106596190 coding upstream 326788 65818970 ~ 65820338 (+)
LOC110538063 abi1 coding downstream 105 66148710 ~ 66168256 (+)
rarab LOC106600859 coding downstream 154183 66302788 ~ 66485858 (+)
LOC110538943 NA coding downstream 356907 66505512 ~ 66526854 (+)
LOC110538074 LOC106600856 coding downstream 395540 66544145 ~ 66560430 (+)
LOC110538073 LOC106600855 coding downstream 441097 66589702 ~ 66633514 (+)
G1101009 NA non-coding upstream 176062 65859820 ~ 65971064 (+)
G1101016 NA non-coding upstream 218158 65874371 ~ 65928968 (+)
G1101013 NA non-coding upstream 253560 65865532 ~ 65893566 (+)
LOC110538052 ifn1 non-coding upstream 339606 65802490 ~ 65807617 (+)
G1100821 NA non-coding upstream 529717 65609578 ~ 65617409 (+)
G1101312 NA non-coding downstream 30325 66178930 ~ 66179473 (+)
G1101321 NA non-coding downstream 39183 66187788 ~ 66188028 (+)
G1101390 NA non-coding downstream 135463 66284068 ~ 66284290 (+)
G1101575 NA non-coding downstream 142768 66291373 ~ 66291581 (+)
G1101607 NA non-coding downstream 183346 66331951 ~ 66332170 (+)
G1100432 NA other upstream 713669 65433140 ~ 65433457 (+)
si:dkey-110g7.8 LOC106600891 other upstream 1770912 64369958 ~ 64376356 (+)
G1097122 NA other upstream 1892062 64254612 ~ 64255064 (+)
G1097116 NA other upstream 1918442 64228001 ~ 64228684 (+)
G1097063 NA other upstream 2010422 64136358 ~ 64136704 (+)
LOC110538072 psd3 other downstream 513359 66661875 ~ 66670815 (+)
G1101805 NA other downstream 576056 66724661 ~ 66822261 (+)
G1102021 NA other downstream 910130 67058735 ~ 67059407 (+)
G1102115 NA other downstream 1076747 67225352 ~ 67225799 (+)

Expression


Co-expression Network