LOC110538074 (LOC106600856)


Basic Information

Item Value
gene id LOC110538074
gene name LOC106600856
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 66544145 ~ 66560430 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021624646.2
GTGTGTAGAAGATCACACATTGATCTTTTTTACATGGATGTAGCATTACCAGACCATGGTAATTTAACTCTCAATTTCGGTTTAGCAGAATTTTGGTTGCATTGTTTGTTGAGTCCATTGTAACTTGGAAATAGTTACATCTGGGGTAAAAATTGCAATTTACTGCCAAGTATTGGTGAGAATCATACCTGATATTGGAGGACATTTCAAGGATCAAGATTGTGACAATTCTACTCTTTATGGCATTAGCTCATCAAATGGTCAAATCTTCATTGGCTGCTGGTGAAGAGATCAGGCTGGTCAATGGCACTAGTCGCTGCTCTGGGACAGTGGAGATTCTTTACGAGGGCCAGTGGGGAAGAGTGTGTGGTCAGAAGTGGGACGTCGACGATGCCAATGTGGTGTGTGGCCAGCTGGGCTGTGGGAGGGCTGTGAGTGCCCAAGGTAGCGTCCACTTAGGTCAGGGTAGTGGTGGCAGGCCGACTTGGCTGGATGATGTTGGGTGTAAAGGCAGTGAGAGCTCCCTCACAGAATGCTCACATGGAGGATTGAAACACCATGACTGTTTACAGTCTCAAGATGCCAAAGTTGTCTGCTCAGTTAAACATAATATCAGACTGGTCAATGGGAGCGACCTCTGCTCTGGGAGGGTGGAGGTCTATCAAATTGGTCAATGGCGAACCGTGTGTAATGACATATGGGATTTGAATGACTCTGCTGTGGCATGCAGACAGCTTGGCTGTGGGAGAGCTGTTAGTGCCCCAGAGAGGGCTTACTTTGGTCAGGGCAGTGGGCCCATCTGGCAGGATGATGTTGGCTGCTCTGGCAGTGAGTGCTCCATCACACAGTGCCCACACACAGGAGGAACACATAACTGTCGTCATGGTAACGACGCAGGTGTTATTTGTTCAGGTGTTGTCTTGCAGACGCCTTCACTCTCCACAAATCAATCATATTCTTCCTTCTTGCAAGGAGAGGAGGTCCAACTCACCTGCACTCTTCCATCCCGTATCCTCTGTAATGCTGTGGAGTTCATCTTCTATCTGAATGGAGACTCCATCATGACTGTGACCGTTGGATCCTCACAGCCCAGGGCTACTTTAACAAAGTTTAAGATGGATGCTTCACACCAGGGCAGTTACCGCTGTCTCTACAGAACCCTCTCCAACAGCCAAGACATCAGCTCCCCTTACAGCAACATTACTAAAGTGGTCCTGCTACAGCCCaacatctctctcagtcctccaaaTGGAGGGGTGTTTTGGGAATCTCAGGGCCCAGAGGTGGTCAGGGGCCACAGCTTCTCCATCACCTGCTCCATTCAGCCACAGTATCCTGGAGGCCTCTTCTATCTGGACTTCTCTGGGTCCAACAGGACTGAAACTAAGCCAGCAGTGAACCACTCTGCCTCCTTCCACTTCCCTGTTGCAGAGTATAAAGACCAGGGGAAATACAGCTGCAGCTATGTAGTCAATGTCTCCACCTGGTCATTCAGGTCGGATAATAGTGAACTAGCTGTCACCATTAGAGCGTTCATGGTCCCCATCATTGTCTCTGGAGGGACTGGTGGGGTAGGACTGCTAATTCTGCTTCTTCTAGTCATGTGTCTAGTCAGCTGGAGGACGAGGATGAACAGAAAGCCATCTATAGAGACTGGCCAGGGAGAATgtattgacaacagacacAACAGAGGGGAGGACAACGAAAAGGAAGAGGACTATGTTAATGTTGAAAACGTCTGTTACCAGAGAGGTCTGGAGGGTGCAAAGAAAAATGAGAAGGAAAAAGGGCACAGCTATGGGAAATCAGAGGACGCCTATGACAACGAGGACGGAAACACTCAAAGAAATGGTGTTTGTGGGGGGTCTCATGAGAAAATTAACAGTGAAGATGATGAAAATGATTATGTTAATGTCTCTGCTTAGGACAATGCTGTAGCACAGGCAGGTGTGTCAGTTGGGTATAGCTTTAAGACCAAAAAGTTAAAAGTAGGCTACAAAAAAAGTTGACTAAAATCATTCAAATCCGCCATTAAAATGCAACGGCTGTTTAGCGTATCTATGGGCTGGCTTTAGGACTACGCAGCAATTAGCTCGGAGGGCCTGTGTGCCTTTCTCTCAGCATTGAGCAGAGACAGTACCCAACAGCTTGCTTGAGGTCACCCTATTTCGGCAGTTCGCCGATTGCTTTGAATTTGATGTCGGCATTTGAACTCGGCCTTGTAAGCCTCACAGCCAGTTTTATGCACCTGCTACTTATACATTGATGTCGGAATAAGCGGCGCATCCGGTAGGCTAGGGGAAGATAAGCTTCGCCTAATGTCAATAGAATGACATTTCCAAAATGAGCTATATAATTACTTGTGCCTTATACAGAAATAAATAACATTACAAATACTACACCAGAGAATATGATTTGACCATAGAGATTCATTAGTTTCTTTTAAAAATGAGCTGTTTTTATTGAAATGAGTCATTTGGGCAGCAGGCGGAAAATAGCCTACAAAATAGTTGATTGTTGAGTTGCAGCAGTCTGTGGAAAGAAGTTTAGTAGGCTAGACtaatatttcaaaatacaatcaCGGGAAAAACATAGTTTAGAAAGCAAATGGCTATTGCTGAGAAGAAAAGGCTCTAATTTGTCTTCTCAACTCATTTTAGTAAACAGTAGCATCTTATTGGCACCAGAGGAGAGCATCAACCACATCCCCAAATGAGTGCACCATATTCACTTGCCTTTATCATTGGATCCCCAAACATTTGGGGAGACTAATTCCCTCCTCCAGGCTAGATGGATGTCATATTGTAGAATTTGTGACTCTCCTTTTTCTAGGCCTAGATTAGATAGTTACATAGTTGATAGTTGTTTTTACTCATCTGTTTGTGagtgtcagcagagtaggctacTAAATTTTGTCGTATTGAAAAATATGTTGCTTATTCCTCCAGTCATATAAAGTGGATTAGAATTGCATAAAATGTGTTTAGGAAAAGGCCACATTTTTCCTGTGCAAAGAAAGGAGAAGAAACGTCTCTGTTTAATCCTACACTATGTCATTACGCGCTCAGAAATGCACTGTTCAGAATGATCTGTTTTGCTTACAGTGATTGAGTTATGTGATTAACCTAAATCTGACTGaaatctactcatcacattagcAATAGTAGCATATATTGCATTAGTCCGCAAATGCGATAGTAGATGCATGAAATCGctatattacactgaacaaaaaatgcaacaatttctaagattttactgagttacagtcaaTTGCAATTAATGAATGAATTAGGcacaaatctatggatttcacatcactgggaatacagatattttAACCCTTGCGTggtgtttttgttattcaccGAACGTTTGTGAGTCTGATGGCCCCACAACGCTattgtttttttaaaacaatacagccataacaatttaGGTAAAAATACTCAATACTTAGATGTTGACTTATATCAATTACAAACAAAGACAGCATACATGGTTCAAATTTGGCATTTATCCCTGGtagatcacatttatc

Function

NR:

description
antigen WC1.1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021624646.2 True 3541 mRNA 0.43 8 66544145 66560430

Neighbor

gene id symbol gene type direction distance location
LOC110538943 NA coding upstream 17291 66505512 ~ 66526854 (+)
rarab LOC106600859 coding upstream 58287 66302788 ~ 66485858 (+)
LOC110538063 abi1 coding upstream 375889 66148710 ~ 66168256 (+)
LOC110538064 NA coding upstream 395540 66147126 ~ 66148605 (+)
LOC110538065 LOC106600861 coding upstream 397224 66142827 ~ 66146921 (+)
LOC110538073 LOC106600855 coding downstream 29272 66589702 ~ 66633514 (+)
LOC110538075 LOC106600854 coding downstream 83597 66644027 ~ 66653962 (+)
LOC110538072 psd3 coding downstream 101445 66661875 ~ 66670815 (+)
LOC110538077 LOC106600959 coding downstream 113705 66674135 ~ 66678665 (+)
LOC110538082 LOC106600849 coding downstream 447583 67008013 ~ 67027138 (+)
G1101698 NA non-coding upstream 40352 66487046 ~ 66503793 (+)
G1101697 NA non-coding upstream 57273 66486582 ~ 66486872 (+)
G1101696 NA non-coding upstream 57610 66486050 ~ 66486535 (+)
G1101692 NA non-coding upstream 66352 66477269 ~ 66477793 (+)
G1101754 NA non-coding downstream 29748 66590178 ~ 66590937 (+)
G1101767 NA non-coding downstream 46939 66607369 ~ 66679468 (+)
G1101805 NA non-coding downstream 164231 66724661 ~ 66822261 (+)
G1101907 NA non-coding downstream 305364 66865794 ~ 66866034 (+)
G1101908 NA non-coding downstream 308001 66868431 ~ 66868632 (+)
G1100432 NA other upstream 1110688 65433140 ~ 65433457 (+)
si:dkey-110g7.8 LOC106600891 other upstream 2167931 64369958 ~ 64376356 (+)
G1097122 NA other upstream 2289081 64254612 ~ 64255064 (+)
G1097116 NA other upstream 2315461 64228001 ~ 64228684 (+)
G1102021 NA other downstream 498305 67058735 ~ 67059407 (+)
G1102115 NA other downstream 664922 67225352 ~ 67225799 (+)
LOC110538103 LOC106600823 other downstream 1244919 67793428 ~ 67810071 (+)

Expression


Co-expression Network