G1096999


Basic Information

Item Value
gene id G1096999
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 64032658 ~ 64076808 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1247619
gaaaggggaaAAATACTTTTTAATGGCACTGTAGAAGCAACTgtcatttttcatactttggtCATCATACTTTGAAATGGTTTCTTAAAAGATCATAACATTTCATGAAACACATGGTTTTGACTGTTCATGAACTTTAATGTTGCAGACACTCAAGATAGAAAGGATATAGGCTAATGCCCAATGTAAACATCCACACACCACTCCCTCCTTATCAGGATGTTTTCAGACCCTTCAACCAATTCtccaaaaatatacatttatttaGGTCTAGCATTACGTTAAAGATCAATATTTACCCGAAATATGAATGGCATTAATTACATTGTATACAAGATAAAAGTGActtcaaacaaaaaacaaattaTGTCAGTTTTATTGTTTCAAGACATTAAGTTAAATATGCATTTGTGTGTTATTAAAAATGATGCATCATCATATTCTGTCATATAGCAGTGGTTGAATTTAGTTGATAAATCAGCTATACTTTTATTTAAGAAATGATGATTAAATTATATCAATTAAAGAAAGATAGAAATTACAAAAAAATGAGGTTATAAAATCAATCATATAGTAACCTAAAAATTATACTGAAACATTgcattacaatacattatcaaTATTTCACTGTCATATTATTCCGATCAGTAATGTGGTGCCAACCGTTACCTGGGTTGAATCAGAAAAATAGGCCTAGAGAACAcaatttcaacaaaaaaaagcaCAATGTATTCACGGAGGCCCAATTTTCAagggatgacagcagtgtattgAGGAGGCAGGGGATTCTGTTGAAACCCTGTACCCATACCGTCTCCCACAGGACCATTTGGGTAGTTCCCAGTCTGTAATGAAAACAACACAGGGACATCACATGACCTTGAGTATGGttatgtcccaaattgcaccccctcctctatatggtgcactacttttgaccagagcctgcaccctatcccctatactGCACTGGTCAAAAATATAGTgcagtatagggaataggatgccatttgagatgATAGACATactacacagcaaattggccagtgttgattttttcagtgtaacatttgtAGTGTTGACAATCACTCTGTAAGAGTGATATTAACACTCGGTGGTGTAAAATAACCCCCAGTGTTGCAGGATGTTTTTTTTAGGATTCATTTTCATATGTGTTTTTGCaagtacattgattgattgattgattaatcgtatgct

Function

NR:

description
membrane-spanning 4-domains subfamily A member 4A-like isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1247619 True 1218 lncRNA 0.34 3 64032658 64076808

Neighbor

gene id symbol gene type direction distance location
LOC110538933 LOC106600901 coding upstream 123985 63888086 ~ 63908673 (+)
trnas-uga-37 NA coding upstream 153971 63878606 ~ 63878687 (+)
trnas-uga-36 NA coding upstream 154593 63877984 ~ 63878065 (+)
trnas-uga-35 NA coding upstream 154895 63877682 ~ 63877763 (+)
trnas-uga-34 NA coding upstream 155521 63877056 ~ 63877137 (+)
baiap2l2a LOC106600898 coding downstream 66047 64142855 ~ 64172178 (+)
LOC110538012 LOC106600897 coding downstream 155331 64232139 ~ 64242953 (+)
si:dkey-110g7.8 LOC106600891 coding downstream 293150 64369958 ~ 64376356 (+)
LOC110538020 LOC106600890 coding downstream 330565 64407373 ~ 64416073 (+)
LOC110538022 LOC106600886 coding downstream 353697 64430505 ~ 64438581 (+)
G1096994 NA non-coding upstream 3998 64028450 ~ 64028660 (+)
G1096992 NA non-coding upstream 7800 64024406 ~ 64024858 (+)
G1096974 NA non-coding upstream 25757 64006515 ~ 64006901 (+)
G1096968 NA non-coding upstream 62968 63967184 ~ 63969690 (+)
G1096952 NA non-coding upstream 98822 63930058 ~ 63933836 (+)
G1097061 NA non-coding downstream 57234 64134042 ~ 64134606 (+)
G1097062 NA non-coding downstream 58852 64135660 ~ 64135899 (+)
G1097064 NA non-coding downstream 63186 64139994 ~ 64140193 (+)
G1097070 NA non-coding downstream 73647 64150455 ~ 64151039 (+)
G1097047 NA non-coding downstream 89467 64166275 ~ 64169646 (+)
LOC100305204 hebp2 other upstream 697964 63302491 ~ 63334694 (+)
LOC118937701 LOC100136295 other upstream 1585184 62441706 ~ 62448515 (+)
G1095540 NA other upstream 2680313 61037739 ~ 61352345 (+)
mmp25a LOC106600705 other upstream 3067063 60931123 ~ 60965921 (+)
G1097063 NA other downstream 59550 64136358 ~ 64136704 (+)
G1097116 NA other downstream 151193 64228001 ~ 64228684 (+)
G1097122 NA other downstream 177804 64254612 ~ 64255064 (+)
G1100432 NA other downstream 1356332 65433140 ~ 65433457 (+)

Expression


Co-expression Network