G1097007 (LOC106607434)


Basic Information

Item Value
gene id G1097007
gene name LOC106607434
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 64044587 ~ 64104286 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1247632
CCAGCGCTTTTGGATGCCCTGCCCGGAAACTTCCCAGCACTGAGGAGACCGTCTGTCCCAGACAGTGAGGAGCAGATGCGACCACTGCAACCCCCATCCCGTACCCATAGGGGTAGACATGGTTGATGACCACCTCCCCGTTAGTGGTGGTTGTTTGAGAGCTGGACATCTTCACAGAGGACAGAAGGATGTTTGTAGTACAGTAAGAGGTGATATGGCTGGTCAGCTGTGTATTGTTGAGCCTCATGCAAAGTTTGTACTCTACCTGGGACTTGCAAAATAGGTtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgacacatttcaggctttaaacataaagatataaaactgtattttttgtgaagaatcaacaacaagtgggacacaatcatgaagtggaacgacatttattggatatttcaaacttttttatcaaatcaaaaactgaaaaattgtgcgtgcaaaattattcagcccctttactttcagtgcagcaaactctctccagaagttcagtgaggatctctgaatgatccaatgttaacctaaatgactaatgatgataaatacaatccacctgtgtgtaatcaagtctccgta

Function

NR:

description
CD20-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1247632 True 616 lncRNA 0.44 2 64044587 64104286

Neighbor

gene id symbol gene type direction distance location
LOC110538933 LOC106600901 coding upstream 135914 63888086 ~ 63908673 (+)
trnas-uga-37 NA coding upstream 165900 63878606 ~ 63878687 (+)
trnas-uga-36 NA coding upstream 166522 63877984 ~ 63878065 (+)
trnas-uga-35 NA coding upstream 166824 63877682 ~ 63877763 (+)
trnas-uga-34 NA coding upstream 167450 63877056 ~ 63877137 (+)
baiap2l2a LOC106600898 coding downstream 38569 64142855 ~ 64172178 (+)
LOC110538012 LOC106600897 coding downstream 127853 64232139 ~ 64242953 (+)
si:dkey-110g7.8 LOC106600891 coding downstream 265672 64369958 ~ 64376356 (+)
LOC110538020 LOC106600890 coding downstream 303087 64407373 ~ 64416073 (+)
LOC110538022 LOC106600886 coding downstream 326219 64430505 ~ 64438581 (+)
G1096994 NA non-coding upstream 15927 64028450 ~ 64028660 (+)
G1096992 NA non-coding upstream 19729 64024406 ~ 64024858 (+)
G1096974 NA non-coding upstream 37686 64006515 ~ 64006901 (+)
G1096968 NA non-coding upstream 74897 63967184 ~ 63969690 (+)
G1096952 NA non-coding upstream 110751 63930058 ~ 63933836 (+)
G1097061 NA non-coding downstream 29756 64134042 ~ 64134606 (+)
G1097062 NA non-coding downstream 31374 64135660 ~ 64135899 (+)
G1097064 NA non-coding downstream 35708 64139994 ~ 64140193 (+)
G1097070 NA non-coding downstream 46169 64150455 ~ 64151039 (+)
G1097047 NA non-coding downstream 61989 64166275 ~ 64169646 (+)
LOC100305204 hebp2 other upstream 709893 63302491 ~ 63334694 (+)
LOC118937701 LOC100136295 other upstream 1597113 62441706 ~ 62448515 (+)
G1095540 NA other upstream 2692242 61037739 ~ 61352345 (+)
mmp25a LOC106600705 other upstream 3078992 60931123 ~ 60965921 (+)
G1097063 NA other downstream 32072 64136358 ~ 64136704 (+)
G1097116 NA other downstream 123715 64228001 ~ 64228684 (+)
G1097122 NA other downstream 150326 64254612 ~ 64255064 (+)
G1100432 NA other downstream 1328854 65433140 ~ 65433457 (+)

Expression


Co-expression Network