G1097047


Basic Information

Item Value
gene id G1097047
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 64166275 ~ 64169646 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1247674
TTCTTGAGgcatttttaaaatttattttagTTTGTTCGTTCACAGCTTCATCTTTTGGTGTGTTTTTACAACAGCtcattaccaaaggagagaggggaggaaaggaaaggaaaggagcaGTGGCAGAAAGTTGAAGTGGAGATGGACAGATAAAGAGTGGGGGAAGCGGGACAGAGTAAAAGGGGGGTGAAGTAAAATGACTTTCTCTCATtttgaaatatctacattattattttAACTTGAGGTTATTGGCCTTCCAGGCGGTCTGATAACTATACGTAAACAGAAACACATACGTTTTGTATaaaaaggaaaaaaataaataggGTGTGGGTgggagtggtggagaggggtAAGTTAGCGGGGTGGGGGGGCGGGAGCCACGACCCCATTCCTCcagtgcagtagtagtagtagtgcgcTTGAGTGGGAGAGAGCTGGGTGTCAGCGAGGGCAGGTGGAGGGatgaggtgagggggggggggttgcagactgggagagagggaatATCGGGGGCCGGGTGGTGGAGCGCTAGTCGGTTTAGGGATGTGTCTATTACTCGTGCACCAGGGCAACGAACTCTGAAAGAGAACAAGGAGAGACCAGAGGTTAGAGCACTCTGTGGAGTCTGGGAAATCGGATGACACTATGATGACACAGGTCCCTGCCGTCTGAGGCAAATCCCTTCAGTACGAACCTATGGACAACAGGAGGATGGCAGAGAGATTTGAATAGAGACAGTACAACAACTAGGAATGCTCTGGTGCCTAAACAGTTAAACGTGAGTGTTTGTTTGTGGATATGGGATGTGGATGCATGTCCGTGTGGTCACTGGATAGTCACCACGCACTATATATTATTTAATAAATTAAGGTGTAGTTAGTCAAAGTGTcggtgtgtgtatctctctgtctatgtctttctggttgtgtgtgtgtctcttacttgagctcctcctcctctatgaaTCCGCTGGCATCAGCGTCCAGCACCAGGAAGGCTTTCTTCACATCCTCAGCTGACTTGGCCTTCAGACCCACCATCTCAAAGAACTTCTTATGGTCAAACGAGTCAGCCGCTGCACGGCATAATACACACACAGTTTAGTGAACACACacgcatgtgcgcacacacacacacacagagtacagacACAAATGGAGGCAGGCACACGCATACAAATGCACGCACGCAGACagaccgcatggcaagtggtaccggagtgccaagtctaggacaaaaaggcttctcaatagtttttacctccaagccataagactcctgaacaggtaatcaaatggctacccggactatttgcattgtgtgccaccccccacccctctttttacgctgcggctactctgtttatcatatatgcatagtcactttaactatacattcatgtacatactacctcaattgggccgaccaaccagtgctcccgcacattggctaaccaggctgtCTGCAtagtgtcccgccacccaccacccgccaacccctcttttactctactgctactctgtccatcatatatgcatattcactttttaagcatatctacatgtacatactacctcaatcagcctgactaaccggtgtctgtatgtagcctcactattTTATagcctgttgttttatttctttacttacctactgttcacctaacaccttttttgcacaaTTTGTTAGAGcctgtaattaagcatttcactgtaaggtctactacacgtgttgtattcggcgcacgtgacaaataaactttgatttgatttgagacaggCACGCACGGATgcttgcacacgcacacactcacacaaaacacaaaaaacaGCATGGGTGGCTGCCTGGACACAGCACTCCAGAGGCTAAATGTTAATGCTAAACAATCATTAAGAAATTACTATTGTTACACTCAGACACACGTTGTATCatcgtgtatgtgcgtgtgtggatTCTGTTGTGCCAGTGGTCATATCAGATCAGGTTAGAGGACTGTGCCAACACCAGGACTAGCTGGCATCTTCTGGCAGATGTGTTACACAATACCAGTTATTACACTATCATAATTATGTTAGATATGATGTGCTATTACAGtatcataattatgtaaaaatgtgttgatcccaaatggcaccctacttccTATATAGGAGGgcactatagggaataaggtgccatttgggacacgtaAAATGTGTATGTTTGACCAAGGAGCTCCTCCTGTTAACACTTTAGTATAGAGAACACATATTAGCCACTAACGTGCAATACAATAAATTAATTTGACCTTTACTAAGTATAATTAGCCATTTATTTTGCCTCTATTCAGTATTTTCTTGTTTACACATTATGGGATGGTTTCCCatacacagattaagcctagtcctggacaacaacagGAAAACTTTCAATGGAGAATCTTCATTGAGAATGCTTCTTAGTCCTGGACTAGGTTTAATGGATGTCTGGGAAACTGTTCCTAAATGTGATGTAAGAAAATAAAATGGAGTAAAAGGTGTTTTGGTCACCTGCGAATGCGTCTAGGGCTTTCTTGATATCGGCAGCGTTGAGAATACTGTTCATCGCCATCTCTGCAACTGGAACGTCAAGGGGGGGAGAAGAAGAAAAGGGGGGAACCAAGTTAAACACAAGGGTACATGAGAGcaaagggaacagagagagacattctCATATTACACTGCTGAGACTTGTGAACTAGAGCAAGAAATCAGGGCGAGAGCGAGATATTGAGAGAACAAattagaaaggagggagaggagggaggaggagaaactGGAGGGCGGTGGAGGTGCTCAGTTCtccatttagtgtgtgtgtgtgtgtgttttttttgggaGGGGGCTGGGGTTATTATAAGAGAAAAATGGCTGGTCTCCAGGCTTCTACTCAGCAAGGTTAGTGCCATAGGATCTGTGCCTTGTGCTGTGTCGGACATACCATAGAACAAGAACAAGAGCTGTGGAGCTAGGAGGCCGTTGGACATACCGCAGAGTTGGAGCTGTGTAGAGCTATAGTGTGGGCCGGGGGCTCCTTCTGTCTCACACTTTGAAAGGCAAGCAGTGTGTCCAACTCTGTGTGCCATTGAAGTCAATTGCTTCTTACTTATAAACGTATCACCTTACCCTTCCTACCCCAGCGCCCATCTGTCtccgaggagaggagagctggggAGTGAGTGGTGTTGACTAAGGGGTTATTGAGGAATGGATTAGTGGGTTGAGGTATGGTTGCCG

Function

NR:

description
PREDICTED: parvalbumin-7-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1247674 True 3257 lncRNA 0.45 2 64166275 64169646

Neighbor

gene id symbol gene type direction distance location
LOC110538933 LOC106600901 coding upstream 257602 63888086 ~ 63908673 (+)
trnas-uga-37 NA coding upstream 287588 63878606 ~ 63878687 (+)
trnas-uga-36 NA coding upstream 288210 63877984 ~ 63878065 (+)
trnas-uga-35 NA coding upstream 288512 63877682 ~ 63877763 (+)
trnas-uga-34 NA coding upstream 289138 63877056 ~ 63877137 (+)
LOC110538012 LOC106600897 coding downstream 62493 64232139 ~ 64242953 (+)
si:dkey-110g7.8 LOC106600891 coding downstream 200312 64369958 ~ 64376356 (+)
LOC110538020 LOC106600890 coding downstream 237727 64407373 ~ 64416073 (+)
LOC110538022 LOC106600886 coding downstream 260859 64430505 ~ 64438581 (+)
LOC110538024 LOC106600885 coding downstream 274114 64443760 ~ 64445157 (+)
G1097070 NA non-coding upstream 15236 64150455 ~ 64151039 (+)
G1097064 NA non-coding upstream 26082 64139994 ~ 64140193 (+)
G1097062 NA non-coding upstream 30376 64135660 ~ 64135899 (+)
G1097061 NA non-coding upstream 31669 64134042 ~ 64134606 (+)
G1097005 LOC106566277 non-coding upstream 81837 64060223 ~ 64084438 (+)
G1097111 NA non-coding downstream 50604 64220250 ~ 64220640 (+)
G1097113 NA non-coding downstream 54033 64223679 ~ 64223970 (+)
G1097115 NA non-coding downstream 57341 64226987 ~ 64227187 (+)
G1097117 NA non-coding downstream 59124 64228770 ~ 64229243 (+)
G1097055 NA non-coding downstream 73565 64243211 ~ 64243564 (+)
G1097063 NA other upstream 29571 64136358 ~ 64136704 (+)
LOC100305204 hebp2 other upstream 831581 63302491 ~ 63334694 (+)
LOC118937701 LOC100136295 other upstream 1718801 62441706 ~ 62448515 (+)
G1095540 NA other upstream 2813930 61037739 ~ 61352345 (+)
G1097116 NA other downstream 58355 64228001 ~ 64228684 (+)
G1097122 NA other downstream 84966 64254612 ~ 64255064 (+)
G1100432 NA other downstream 1263494 65433140 ~ 65433457 (+)
LOC110538063 abi1 other downstream 1979563 66148710 ~ 66168256 (+)

Expression


Co-expression Network