G1101312


Basic Information

Item Value
gene id G1101312
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 66178930 ~ 66179473 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1252372
atttggcccagcctttggaactttggttttcctagatatggctgcgatattgtgatcactacatcctatcgatttggatactgctttaaagcaaacttctgcagcattagtaaagatgtgatctatacatgttgatgatttaattcctgtgctgtttgtaaatacaTTGGTAGGTTGACTGAGACCCTGAACCAGgctgcaggcactggttacagtttgaattttattcttgagtgggcagcttgatgagtgccagtcaatatttaaatcacccagaaaatatactgttgatatcacattatcaagcatttcacacatattatccagatactgactgttagcacttggtggtctatagcagcttacAACAAGAGTGGGCTTAAGGTGAGGcggatgaacctgtagccatattacttcaacagtatttcacATGAGAtcatctctaagctttacaggaatgtggttctgaatacaGACTGCAACACCACCcccattggcatttctgtcttttctgtagacGTTAtatattgctaccactgtatca

Function

NR:

description
uncharacterized protein LOC101478887

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1252372 True 544 lncRNA 0.40 1 66178930 66179473

Neighbor

gene id symbol gene type direction distance location
LOC110538063 abi1 coding upstream 10674 66148710 ~ 66168256 (+)
LOC110538064 NA coding upstream 30325 66147126 ~ 66148605 (+)
LOC110538065 LOC106600861 coding upstream 32009 66142827 ~ 66146921 (+)
LOC110538062 LOC106600863 coding upstream 36241 66105343 ~ 66142689 (+)
LOC110538942 ifne coding upstream 166622 66011207 ~ 66012308 (+)
rarab LOC106600859 coding downstream 123315 66302788 ~ 66485858 (+)
LOC110538943 NA coding downstream 326039 66505512 ~ 66526854 (+)
LOC110538074 LOC106600856 coding downstream 364672 66544145 ~ 66560430 (+)
LOC110538073 LOC106600855 coding downstream 410229 66589702 ~ 66633514 (+)
LOC110538075 LOC106600854 coding downstream 464554 66644027 ~ 66653962 (+)
G1101009 NA non-coding upstream 207866 65859820 ~ 65971064 (+)
G1101016 NA non-coding upstream 249962 65874371 ~ 65928968 (+)
G1101013 NA non-coding upstream 285364 65865532 ~ 65893566 (+)
LOC110538052 ifn1 non-coding upstream 371410 65802490 ~ 65807617 (+)
G1100821 NA non-coding upstream 561521 65609578 ~ 65617409 (+)
G1101321 NA non-coding downstream 8315 66187788 ~ 66188028 (+)
G1101390 NA non-coding downstream 104595 66284068 ~ 66284290 (+)
G1101575 NA non-coding downstream 111900 66291373 ~ 66291581 (+)
G1101607 NA non-coding downstream 152478 66331951 ~ 66332170 (+)
G1101609 NA non-coding downstream 154683 66334156 ~ 66398123 (+)
G1100432 NA other upstream 745473 65433140 ~ 65433457 (+)
si:dkey-110g7.8 LOC106600891 other upstream 1802716 64369958 ~ 64376356 (+)
G1097122 NA other upstream 1923866 64254612 ~ 64255064 (+)
G1097116 NA other upstream 1950246 64228001 ~ 64228684 (+)
LOC110538072 psd3 other downstream 482491 66661875 ~ 66670815 (+)
G1101805 NA other downstream 545188 66724661 ~ 66822261 (+)
G1102021 NA other downstream 879262 67058735 ~ 67059407 (+)
G1102115 NA other downstream 1045879 67225352 ~ 67225799 (+)
LOC110538103 LOC106600823 other downstream 1625876 67793428 ~ 67810071 (+)

Expression


Co-expression Network