G1102074


Basic Information

Item Value
gene id G1102074
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 67138632 ~ 67142806 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1253204
ACAacacaaaatatacattttaattaGCTTGACAACAGGCAGactacatttgaaaaaaataagCTGTCAATAGAAATCAACAAAGCGAAAAATTGTTAGCCTCTTCTTCGTTGGCGTTAAAAAAGGAAATATTAAAAGTGTATTTGTCCATCATAGGCTAGTAACAAAATATGTTATTCTTATAGTCCTAATGGTGTTCTCAGTGCTTTAGAAAAAACATAGGCCTAACCAACTACACCAACTTCGTTTTAGTATGAATACAAAATAATTCTAAAACATAAATTAAACATGGGGTAACCTGACTTTCAACTAGATACAGGACTACTGTAACACTACACAGGCTATTGCCTTTTTCTGTTAAGTTTACAAAGCTTTAAAAGTGTAGTATAACATAACTTCATATTTCAAGTTCTCTATAACATAACTTCAGAATTATTGAAGCCCAAGCAACAGTTTCCCTAGTTGTGTAGGCCTGCACACATTACAACAAAATGCAGTTGATTGCTTGGTTTGGTTAAAACATTTCTTTACAGAGTATTTGTGGGTTAAGGGAAATTAACAAAATCATATGCTATAATATCTTGCAATTTATTGCAAATCAAATAAATTAAATAGATTATttccaaaataatacatacaaaagGTCAGCTTGCCTTCACATGAAAAATGCCCATACTTGCCACTAGTTACCATAAATATAGCCTATTTAAGCATAAAACGCTAAATACACCTTTAATATTTACACATACATTCCTACTGTCCATTCCACTGTAAGACATTTGACCTTTGGACAGGCGGTGTAGATCATTTGAGTATTGACCACTTTATTTGTTCTTTGGCAGACTGCATTATCTGGAAAGAAAAACCCCAGAAAGAACACTTTCAGATTCAATGTGGAAAAACAACATTATCACAGATCATATAGTAAGTAGCCTATTATAGTATGCAGTGTGTTATATTTATTGTTCATTGTGACACTTCAACCAGTAGGTGTCACTGTTGTATTAATGTGAATTTGAAGGGAACTGCTCACCTTTCATTATTTACATGAAATATGAGCTCCTTAAACTTGCAAGTGTAACATCAAACGTTGTAAGTGTATTTTGTGTAGTAGACACAAAAAAGTGACAGTCAGCTTCTCTGAGCAGACAAATGAATTTTCATCTTGCTTAGAAAGAATTTAATTCTATTCAATGACATGATGCAAGTGTGACTCAGTGATTTATAAAATGTCACTCTTCCTGCTAAAACGAAATTCCACAAGAGAAACAAACTGCATTTTTTTGGGCTgttgaaacagagatgcatagcATAAAACTACACACCAGGGGGCGCAAGGAACCCAGCTAAAATTATGAACTTGTGACTAGCGTTTACTGTCTACCTCTAGTCGTTTACGGTTTCGTTTAATGTTAAGTGTTTATTGTTTTAGGTTTATTGTCAAGGTCTAGTGTTTTTATATAGGCACCATGACAATTCCATTTCTATTAGAGGATCGAAAGGTATTGTCATTGACGTTTGGTTCCAACAAGGGAGAGAAACTGCCACAAGACAAATAGTTAATAGCTTTGGATATGAACCCTTCCTGGCAAGCAGGGTCTGACTCAGGAGTACAGGGCAGTCTGAAAGTCACACAGAGAGATGACCAGTATAGAACAGTCATGATGTGTCCATTCTATACACGTCATATCTATCTGCAACATTCTGGTCTTCTGAACACGCCCCAAGAGACTCAAAATGTCCCATGTTGGAGGGTGAAGAGTGAGAGGACTTACATTGGAGGTCATAGCCAATTTGTCCGTAATGTGCTGTGAGGGTTAAAGTAGAGGGTTAGGAGAAGAAGGAAAGAGGAAGAAACAGGCAGAACATTGCATGAAGGTAAGAGCAATTCAGCAGCCATGTTGATCAATGCAATGTGGCCCATTCCATAATTTACTATGCAGGTGTGAGCATGGCATCAAATCCAGATGCAGGTTAGTTCATGCTGGCAAAGCTTCAAACAATCAGGTACTATGAGTAGTAATATAATTGTCAATTTTCAAATGGAACAATACTGGGAGACAATTATCCATATATTGTGTACTGTGGCTTTATTCTACAGAACATTTAGTATTGAAATGATGAAAATGGGTAACTGGAAAGACATGAATCAGGGCTGGGGACAAATCCATTTAAAATCCAgtccattcaggaactgaccccaaccctgataagAATCATGTTATAGTTTATATGCAattaatatactgtacatgacaGTAGAATAGAAGGTTATGTCATCAGGTGTGAGCTGAAATTAATGGCTAAAGCTGTATCAATGGAAAAGTTAATCATAGTCTATACATGCAGTGACAttgctttgtttgtgtgtgtgtatgacctcACCTGGGCCACGCTCTGCTCTGACAGTGGGTTCTCATCCGCCTGGAATAGATCAAGTAAAAGAGGGGACATGACGTCATAGCAATCACACACCATTGTGTGTGTAAAGAGTCAAACACATAAAGCAAGCGACAACTAACATAATACCCTTATAACAATAATGTGATGCCTTGCATTGCTAATGTAAATACACTCTGACACTGGTGAATATGTCAATGACCACCGCAATCTAATCAAAATGGCTGCCTCACACAAGGCATGCATTGTGCAAGGGAGTACTACAAAGGGCCCCGCTGCTCTTAAAGTGTACCAACACCTATGGTATTTCCTGGAACCCCATACGACCTCCTTGAAACACTCTGGGTAACCTCAGTCTAACCCCTGACAAACCCAAGCAAGACAGACTTAGTGGACAGTTGTTCCAGCATTGTGAACCTAAAGTGGCATGCTCTCTCACCATGCAGTTACCTGCACTGGatctccctcaacccctccctccctcaccccctccctccctcaccccctccctccctcactcgcCCTCTCTGGTTGTTGGGGCAGTCTGTTGCTATGCACACTGGCttctgtccgtctgtccatcAATGTTACCAACGATGTAATCAAAGAGGTCGAAGCCGTAGGCTTGCTCTGAACCATCCAGCTGACAGTGTGAGGAGTTGGGTGGGgtcgggggagagagaggacacatgTAAGAGGAAGATGAGATGGACTTGGGTGATGAGGGGATGGTGGGGAGGGGGGCTGAAGACTGGCATTTGGTGTTGTGACATCAAATAAGTAAATTAATTTTCCTCAAACATACAGGTTATCAGATTCCACAACAATCCCACTAAACACAATCCCTACCTCAGTCGGTCCGAAAATATCATAATTTCCTATAGTCATCTGTGTCTTCAAGTATTGTACTCATATCAGAATCTGTATTCATCCATACAGTAGACACAGCCTGTGATTGTAGGTGTCTTACCCTGTAATTGACCTTCTGGATGACCTGTTGGGGGTCGCTTTCCAAGATCACCCTGGTAACACAATGCTAGGGTCAGTAACTCAGAGAACACAAGATATTGTACCAGTAACTCCCAAACCCCATCCCATGAATGATacgtcaaatcaaagtttattggtcgtgtacaaagtttaacagatgttatagcgggtgcagTTTAATTATTGTGTTAATAACTACTAACAAggcagtaaaatgtcaaacaaggACACAAATAATCCAACATTTtttcaaaacaagaaatgtgGGAAAGAAACCAATTATCAACACAAATAGCAAtgtaacagtaatccaaatgcaatctatacGTTACCCCCCGTCGATAATTTCGTCCACTACTAAGAAGACTCCGTCCAGGTTGTCCAATAGACACCTTCTCTCCACATTTTTCCTGGAAGTAAGAAAACTTGATTGACTTACTTGAATTGTAGTTAGTACGTGGAGCCCAATCTGTGATTGGGTCTCATATTATTGCCTTGTGACCAGAAATGTAGGGGACACTACTGCTCATGTCACCTTAGGCTATTCTGTACATTTCAAACACCGACTTAAATTAACTTCCTGTAGTACCAGTTGTCAAGGCTTGACATGATACTTAACAGCTGGCATTTTGTTTTTGTTAAATAGGAGAAAAACTGCATGAAGTGAGTAGAGAGCAAATAGATGAAttgactctctccctc

Function

NR:

description
coatomer subunit zeta-1-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1253204 True 4092 lncRNA 0.39 2 67138632 67142806

Neighbor

gene id symbol gene type direction distance location
LOC110538082 LOC106600849 coding upstream 111494 67008013 ~ 67027138 (+)
LOC110538077 LOC106600959 coding upstream 459967 66674135 ~ 66678665 (+)
LOC110538072 psd3 coding upstream 467817 66661875 ~ 66670815 (+)
LOC110538075 LOC106600854 coding upstream 484670 66644027 ~ 66653962 (+)
LOC110538073 LOC106600855 coding upstream 505118 66589702 ~ 66633514 (+)
LOC110538084 LOC106600841 coding downstream 5995 67148801 ~ 67164013 (+)
LOC118937895 NA coding downstream 138157 67280963 ~ 67292113 (+)
LOC110538094 NA coding downstream 338256 67481062 ~ 67491128 (+)
LOC110538945 LOC106607489 coding downstream 428418 67571224 ~ 67574023 (+)
LOC110538098 LOC106607492 coding downstream 494318 67637124 ~ 67643446 (+)
G1102044 NA non-coding upstream 43700 67094706 ~ 67094932 (+)
G1102043 NA non-coding upstream 45392 67092997 ~ 67093240 (+)
G1102026 LOC106600846 non-coding upstream 66990 67064618 ~ 67071642 (+)
G1102024 NA non-coding upstream 75505 67062891 ~ 67063127 (+)
G1102022 NA non-coding upstream 76743 67061662 ~ 67061889 (+)
G1102098 NA non-coding downstream 48600 67191406 ~ 67191745 (+)
G1102101 NA non-coding downstream 54219 67197025 ~ 67197271 (+)
G1102117 NA non-coding downstream 84941 67227747 ~ 67227946 (+)
G1102118 NA non-coding downstream 90477 67233283 ~ 67233683 (+)
G1102706 NA non-coding downstream 113045 67255851 ~ 67256069 (+)
G1102021 NA other upstream 79225 67058735 ~ 67059407 (+)
G1101805 NA other upstream 367241 66724661 ~ 66822261 (+)
LOC110538063 abi1 other upstream 970435 66148710 ~ 66168256 (+)
G1100432 NA other upstream 1705175 65433140 ~ 65433457 (+)
G1102115 NA other downstream 82546 67225352 ~ 67225799 (+)
LOC110538103 LOC106600823 other downstream 662543 67793428 ~ 67810071 (+)
G1103416 eif1b other downstream 844888 67987694 ~ 68048717 (+)
G1104149 LOC106600798 other downstream 1361235 68504041 ~ 68505295 (+)
G1104162 NA other downstream 1385475 68528281 ~ 68531861 (+)

Expression


Co-expression Network