XLOC_030063 (gabarapa)


Basic Information

Item Value
gene id XLOC_030063
gene name gabarapa
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 24059598 ~ 24061806 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058794
CGTTTACTTTCAGGTTTTGCCACGTAGTTATCCTGTCCCGACCACTTGGTCTGATGATCTTCAATACTGCTGATGTCATTACGCAGCTGACGTAACTTGACGTACGCCGCCTCCCTTGTTCCTTGTATATCCCTCCGCCCTCCGACGCAGTTGTCAAAAAACCCTGATCTAGTTTGTAAACACTACCGACGGCAGGTTTTCTTGGAGATTTTGAAGATCTCCCAAACCTTGACAATGAAGTTTATGTACAAAGAAGAGCATCCCTTCGAGAAGCGACGGTCCGAGGGGGAAAAAATCAGAAAGAAGTACCCGGACAGAGTGCCTGTTATTGTTGAAAAAGCTCCCAAAGCCAGAATAGGAGATCTGGACAAAAAGAAATACCTCGTCCCGTCTGACCTCACAGTTGGGCAGTTCTACTTCCTTATTCGAAAAAGGATCCACTTGAGGGCTGAAGATGCCCTGTTCTTCTTTGTCAACAATGTCATTCCTCCCACATCAGCCACTATGGGACTGCTCTACCAGGAGCATCACGAAGAAGACTTTTTCCTTTACATTGCCTACAGTGATGAAAGCGTGTATGGGGATGTTTTGAAAGACGTGTAACCAATTTGCTCCACATTACcagtctttaaaataaaatgatcaatacGTTAGGCTACTTGAGGTGTACATGTTGAATGCACTTTCATATCCCCCTCCTAGTCTGTTTATGAAATCTTGTTTGTACTCCATGCTGCCTGCATTTTGTTCTTTTCGGTTTAAGAATTTCCCCCTTCAGTCTTGCTTTACTAAGACAGACCTAGAAAAATCTTAGCTTTGGTCCGTTTCAGTAAATTTTAGTGGGTTTCATATCCATAAAGGCTCTTTCAATGTTTTACACTTCTCCTTTCACTTTTCCTCATTTTTACTCCGCACCGCCATGCATCATGCAGTTGTGCTACTGCagtctatttagtttttttttagccaCCCTATTTGCACAGACCAAAATCATTTATAATACTGGACTATCATACCATGtaaagtgtgaatgtgtgtttgtgtactgttgccaattattattttaaaacaggtTAAGATTGCTGTTTATTTGAATAAACTGTTTAAAAGGTTTCATTTCAGTTGATGTAGGAGATcgaatgtttatttgatttttattattattattattaaggttcATGAGTTGATTGGCTTTTTTGCACATTTGTATTATGGAttggtgtgtttatttttttcgtttttttttcctaaaagcTTTAATTGTAATGGCCACAAATCTTAAGCTTGTCACCATTATAAACCTGATGTGAAACAA
>TCONS_00058795
GTTTGTAAACACTACCGACGGCAGGTTTTCTTGGAGATTTTGAAGATCTCCCAAACCTTGACAATGAAGTTTATGTACAAAGAAGAGCATCCCTTCGAGAAGCGACGGTCCGAGGGGGAAAAAATCAGAAAGAAGTACCCGGACAGAGTGCCTGTTATTGTTGAAAAAGCTCCCAAAGCCAGAATAGGAGATCTGGACAAAAAGAAATACCTCGTCCCGTCTGACCTCACAGTTGGGCAGTTCTACTTCCTTATTCGAAAAAGGATCCACTTGAGGGCTGAAGATGCCCTGTTCTTCTTTGTCAACAATGTCATTCCTCCCACATCAGCCACTATGGGACTGCTCTACCAGGTACACACCTCGTACCCTTTGTGATAACGAACTTGATTATTTGTTTGTTACAGCTTACCCCTTTGCTACACGTATGCTTTCATAAGATAATTAAGCATTCCTCTTTGTTTCTCTTTTAGGAGCATCACGAAGAAGACTTTTTCCTTTACATTGCCTACAGTGATGAAAGCGTGTATGGGGATGTTTTGAAAGACGTGTAACCAATTTGCTCCACATTACcagtctttaaaataaaatgatcaatacGTTAGGCTACTTGAGGTGTACATGTTGAATGCACTTTCATATCCCCCTCCTAGTCTGTTTATGAAATCTTGTTTGTACTCCATGCTGCCTGCATTTTGTTCTTTTCGGT

Function

symbol description
gabarapa Predicted to enable GABA receptor binding activity and ubiquitin protein ligase binding activity. Acts upstream of or within brain development. Predicted to be located in membrane. Predicted to be active in autophagosome membrane and cytosol. Is expressed in central nervous system and eye. Orthologous to human GABARAP (GABA type A receptor-associated protein).

GO:

id name namespace
GO:0006914 autophagy biological_process
GO:0000045 autophagosome assembly biological_process
GO:0006995 cellular response to nitrogen starvation biological_process
GO:0000422 autophagy of mitochondrion biological_process
GO:0016236 macroautophagy biological_process
GO:0007420 brain development biological_process
GO:0005776 autophagosome cellular_component
GO:0005829 cytosol cellular_component
GO:0000421 autophagosome membrane cellular_component
GO:0031625 ubiquitin protein ligase binding molecular_function
GO:0050811 GABA receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5174 Predicted to enable GABA receptor binding activity and ubiquitin protein ligase binding activity. Acts upstream of or within brain development. Predicted to be located in membrane. Predicted to be active in autophagosome membrane and cytosol. Is expressed in central nervous system and eye. Orthologous to human GABARAP (GABA type A receptor-associated protein).

Ensembl:

ensembl_id ENSDARG00000035557

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058794 False 1315 mRNA 0.39 4 24059598 24061806
TCONS_00058795 True 706 lncRNA 0.42 3 24059769 24061249

Neighbor

gene id symbol gene type direction distance location
XLOC_030062 ctdnep1a coding upstream 2802 24047292 ~ 24056796 (+)
XLOC_030060 AL928875.1 coding upstream 37164 23994038 ~ 24022434 (+)
XLOC_030061 NA coding upstream 48699 24008862 ~ 24010899 (+)
XLOC_030059 ercc6l coding upstream 133079 23913585 ~ 23926519 (+)
XLOC_030058 CR391924.1 coding upstream 149149 23910333 ~ 23910449 (+)
XLOC_030064 gps2 coding downstream 1240 24063046 ~ 24074538 (+)
XLOC_030065 tp53 coding downstream 24421 24086227 ~ 24097805 (+)
XLOC_030066 si:ch211-114c12.2 coding downstream 67102 24128908 ~ 24135569 (+)
XLOC_030067 slc25a15b coding downstream 94364 24156170 ~ 24163572 (+)
XLOC_030068 mpdu1a coding downstream 117501 24179307 ~ 24185865 (+)
XLOC_030056 NA non-coding upstream 174427 23873557 ~ 23885171 (+)
XLOC_030055 NA non-coding upstream 234068 23822572 ~ 23825530 (+)
XLOC_030053 AL929305.1 non-coding upstream 386223 23673259 ~ 23673375 (+)
XLOC_030069 NA non-coding downstream 138859 24200665 ~ 24228356 (+)
XLOC_030071 NA non-coding downstream 199744 24261550 ~ 24278326 (+)
XLOC_030074 NA non-coding downstream 278871 24340677 ~ 24450520 (+)
XLOC_030075 NA non-coding downstream 407665 24469471 ~ 24472076 (+)
XLOC_030078 NA non-coding downstream 754519 24816325 ~ 24835317 (+)

Expression


Co-expression Network