XLOC_030064 (gps2)


Basic Information

Item Value
gene id XLOC_030064
gene name gps2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 24063046 ~ 24074538 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058796
AAACTGGGTTTCCTGTCCTCCTTATTTTGGTTAAATACTgatatacttgtttattttttctttacggAAAGCCTTCAGACAAGCTCAGCATACTTTTAATCTCAGAAACGGACAAAAGTGCGTTATATGAAGATTCCAAGAGTTTCATtgcaagagtttttttttattcagtgcgCTGATTTTGCAAGCTAGCTGACTAAGCTGTTACTTGAGCCGTTAGCCTGTTAGCCTGATGGTCAAGGCTGCTAGCCTTATAGTCATGTGTTAATCGATTTTACTGTAAAAAGAAAATACTGAACTCACTTTCGCCTGTAAAAGTTTGTCtattttttatcaattattttctTGAACATCTTGGCACAATCGATTATCGAAACATTAAGGTTACTGCAAGCATAGCCAGCTAGCTTGTTAAGTCGTTACAGAGCTAATAGGGAGTTTGCTGCATTTTATTGCTTCTCATTACCACATACCCTTTCTTTTAATTCACATTTTGCTCTAACTCGTAGTCTTTTGTTTTTAGAATTGATATGCTGGCACCACCAATCCCTACCATCATGCCGGCTCTTCTGGAGAGGCCCAAACTGTCTAATGCCATGGCACGTGCCTTACACAAGCACATCATGAGAGAGAGGGAGCGCAAGAGGCAAGAGGAGGAAGAGGTTGACAAAATGATGGAACAGAAGTtaaaagaagaggaggagaggaaaagGAAGAAGGAGATGGAGGAGAGGATGTCCTTAGAGGAGACTAAAGAGCAAatTATGAAGATGGGAGTGAAGCTGCAGGGCCTTCAAGAGGAGAAGCACCAGCTTTTCTTACAACTGAAAAAAGTTCTACATGAAGAGGAGAAAAGACGTCGGAAAGAACagagtgaCATGACAACCCTGACTTCAGCCACATACCAGGCAAACATGCCTATCCACCCTAGCCAGCACATTCTTAGCATGCAAGCGGGTCAGGTGAGTCATGGCCGTCCAGCTGTTCTGCTTGGGGAACGCAGTAAACAGCTCTTCCAGTCTCCGGTCATTCCTGCACGTCATTTCCAGTCTCAGCCAGGATTTAGTGCAGGTGGATCAGAGCACGGCCAATATTCGGGAGCGCAGCCAGGTCACAGCCCGTATGGAGTCACCCAGACGCAGCATACATCACCTTTTGCCTCCAGTCAGCCTGTGCCAGCCAACTATGCCAGTAGTTCACAACTAAGAGGTGCATCAGCATTCCAGACCATGCAGTACCTGCCCCATCAGCAGCAAGGCTATGCAGTTCACAGTCACTTCACCTCTCAGCCAGGCTACATCCCTAGCGCTGGGATTCCCCTTCAGAAACAGCTGGAACATGCTAACCAGCAGTCCGGCTTCACAGACTCTAGTCCCCTGAGGCCCATGCACCCACAGGCTCTTCATGTCAGCGCTGCGAGTTTGCTGTCCACTCCTCCTATTGCTGTGCAGATTCCTCCTGGCAAGTCTGGCATATCTTATACACATTCGCAAAGGCCAGCATCTCCAGGTGCATTTTCCCATGGAACGCCCTCACAGCAAGCACATGCAGCTACGTTTCAAAGCTCCTCTCAAGCAACCCCTCGCCACGCCTACCTCTCTCACAGCCAATCAGGGCAGAGGTTTTACCACCATGGCAAATAGCCATTCGTTTTAGTTCAATGCAGAATGTTGGGGTAGAAGGAAAGATTCGCAGGCTTTTGGATTAAAGCTACACAGCCCACAACGCTTGGCATCGTGTTACAACATAAAACACATGACTATTACTGTCACGTCCCAATCGTTTTTCTCTTTCTTAGATCTGCCTTTGTAACCGGGTTTATTTGAACATTACAGTGAGATGTGTCTGaatgtttcttttattcatttgacAACAGCTGTGCCAACATTAGTCGTATTAAATACTACCACAACATAAGTT
>TCONS_00058797
AAACTGGGTTTCCTGTCCTCCTTATTTTGGTTAAATACTgatatacttgtttattttttctttacggAAAGCCTTCAGACAAGCTCAGCATACTTTTAATCTCAGAAACGGACAAAACTGGCACCACCAATCCCTACCATCATGCCGGCTCTTCTGGAGAGGCCCAAACTGTCTAATGCCATGGCACGTGCCTTACACAAGCACATCATGAGAGAGAGGGAGCGCAAGAGGCAAGAGGAGGAAGAGGTTGACAAAATGATGGAACAGAAGTtaaaagaagaggaggagaggaaaagGAAGAAGGAGATGGAGGAGAGGATGTCCTTAGAGGAGACTAAAGAGCAAatTATGAAGATGGGAGTGAAGCTGCAGGGCCTTCAAGAGGAGAAGCACCAGCTTTTCTTACAACTGAAAAAAGTTCTACATGAAGAGGAGAAAAGACGTCGGAAAGAACagagtgaCATGACAACCCTGACTTCAGCCACATACCAGGCAAACATGCCTATCCACCCTAGCCAGCACATTCTTAGCATGCAAGCGGGTCAGGTGAGTCATGGCCGTCCAGCTGTTCTGCTTGGGGAACGCAGTAAACAGCTCTTCCAGTCTCCGGTCATTCCTGCACGTCATTTCCAGTCTCAGCCAGGATTTAGTGCAGGTGGATCAGAGCACGGCCAATATTCGGGAGCGCAGCCAGGTCACAGCCCGTATGGAGTCACCCAGACGCAGCATACATCACCTTTTGCCTCCAGTCAGCCTGTGCCAGCCAACTATGCCAGTAGTTCACAACTAAGAGGTGCATCAGCATTCCAGACCATGCAGTACCTGCCCCATCAGCAGCAAGGCTATGCAGTTCACAGTCACTTCACCTCTCAGCCAGGCTACATCCCTAGCGCTGGGATTCCCCTTCAGAAACAGCTGGAACATGCTAACCAGCAGTCCGGCTTCACAGACTCTAGTCCCCTGAGGCCCATGCACCCACAGGCTCTTCATGTCAGCGCTGCGAGTTTGCTGTCCACTCCTCCTATTGCTGTGCAGATTCCTCCTGGCAAGTCTGGCATATCTTATACACATTCGCAAAGGCCAGCATCTCCAGGTGCATTTTCCCATGGAACGCCCTCACAGCAAGCACATGCAGCTACGTTTCAAAGCTCCTCTCAAGCAACCCCTCGCCACGCCTACCTCTCTCACAGCCAATCAGGGCAGAGGTTTTACCACCATGGCAAATAGCCATTCGTTTTAGTTCAATGCAGAATGTTGGGGTAGAAGGAAAGATTCGCAGGCTTTTGGATTAAAGCTACACAGCCCACAACGCTTGGCATCGTGTTACAACATAAAACACATGACTATTACTGTCACGTCCCAATCGTTTTTCTCTTTCTTAGATCTGCCTTTGTAACCGGGTTTATTTGAACATTACAGTGAGATGTGTCTGaatgtttcttttattcatttgacAACAGCTGTGCCAACATTAGTCGTATTAAATACTACCACAACATAAGTTAAATCTGGCTTTATACCTGAACTGAACAATGCAGAAATGCGTTCAGATATTACAATTTCAAGTTCTTGAAAGTCTACAAGAGCTGGAAGTTGCTAAGACTTATTTCAGTTTGTGGATGTACTTCTAACTTAACTGGAATATGGATTAGGGAATTATTTTGCACAtcattctctcatagcaaactaacggtaagaggccTGTGGTTAAGAATAATGTGTGTGAAGCCGTCAAACTAAAGCAAATGTTCCGattttgaagattaccaaaacactttttaaattaatcgttcacctaaagaataacaacgtGCGCTAACAAAACCAACATTGTAAATATTGATTTGACAAGGACTCCCACTCAGGGCCATCTGTAACTTGCATTAACATTGATGAATGCCGAGGAAAGCTGCCACAGAAAAGTAATATTTTCATAtgattttaatttgtaaatgttttaagcCAACCAACTGAATTTCACAAAAGTGCAcatgaaatatacattttattaatctgTTAAAGGAGCTTCTTAAAATAGTATTAAATGGTTGTGTagaaaa
>TCONS_00058798
tttattttttctttacggAAAGCCTTCAGACAAGCTCAGCATACTTTTAATCTCAGAAACGGACAAAAGTGCGTTATATGAAGATTCCAAGAGTTTCATtgcaagagtttttttttattcagtgcgCTGATTTTGCAAGCTAGCTGACTAAGCTGTTACTTGAGCCGTTAGCCTGTTAGCCTGATGGTCAAGGCTGCTAGCCTTATAGTCATGTGTTAATCGATTTTACTGTAAAAAGAAAATACTGAACTCACTTTCGCCTGTAAAAGTTTGTCtattttttatcaattattttctTGAACATCTTGGCACAATCGATTATCGAAACATTAAGGTTACTGCAAGCATAGCCAGCTAGCTTGTTAAGTCGTTACAGAGCTAATAGGGAGTTTGCTGCATTTTATTGCTTCTCATTACCACATACCCTTTCTTTTAATTCACATTTTGCTCTAACTCGTAGTCTTTTGTTTTTAGAATTGATATGCTGGCACCACCAATCCCTACCATCATGCCGGCTCTTCTGGAGAGGCCCAAACTGTCTAATGCCATGGCACGTGCCTTACACAAGCACATCATGAGAGAGAGGGAGCGCAAGAGGCAAGAGGAGGAAGAGGTTGACAAAATGATGGAACAGAAGTtaaaagaagaggaggagaggaaaagGAAGAAGGAGATGGAGGAGAGGATGTCCTTAGAGGAGACTAAAGAGCAAatTATGAAGATGGGAGTGAAGCTGCAGGGCCTTCAAGAGGAGAAGCACCAGCTTTTCTTACA

Function

symbol description
gps2 Orthologous to human GPS2 (G protein pathway suppressor 2).

GO: NA

KEGG:

id description
ko05166 Human T-cell leukemia virus 1 infection

ZFIN:

id description
ZDB-GENE-040426-1176 Orthologous to human GPS2 (G protein pathway suppressor 2).

Ensembl:

ensembl_id ENSDARG00000035558

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058796 False 1920 mRNA 0.46 12 24063046 24073982
TCONS_00058797 False 2060 mRNA 0.44 12 24063046 24074538
TCONS_00058798 True 774 mRNA 0.41 4 24063095 24066226

Neighbor

gene id symbol gene type direction distance location
XLOC_030063 gabarapa coding upstream 1240 24059598 ~ 24061806 (+)
XLOC_030062 ctdnep1a coding upstream 6250 24047292 ~ 24056796 (+)
XLOC_030060 AL928875.1 coding upstream 40612 23994038 ~ 24022434 (+)
XLOC_030061 NA coding upstream 52147 24008862 ~ 24010899 (+)
XLOC_030059 ercc6l coding upstream 136527 23913585 ~ 23926519 (+)
XLOC_030065 tp53 coding downstream 11689 24086227 ~ 24097805 (+)
XLOC_030066 si:ch211-114c12.2 coding downstream 54370 24128908 ~ 24135569 (+)
XLOC_030067 slc25a15b coding downstream 81632 24156170 ~ 24163572 (+)
XLOC_030068 mpdu1a coding downstream 104769 24179307 ~ 24185865 (+)
XLOC_030069 NA coding downstream 126127 24200665 ~ 24228356 (+)
XLOC_030058 CR391924.1 non-coding upstream 152597 23910333 ~ 23910449 (+)
XLOC_030056 NA non-coding upstream 177875 23873557 ~ 23885171 (+)
XLOC_030055 NA non-coding upstream 237516 23822572 ~ 23825530 (+)
XLOC_030053 AL929305.1 non-coding upstream 389671 23673259 ~ 23673375 (+)
XLOC_030071 NA non-coding downstream 187012 24261550 ~ 24278326 (+)
XLOC_030074 NA non-coding downstream 266139 24340677 ~ 24450520 (+)
XLOC_030075 NA non-coding downstream 394933 24469471 ~ 24472076 (+)
XLOC_030078 NA non-coding downstream 741787 24816325 ~ 24835317 (+)

Expression


Co-expression Network