XLOC_030066 (si:ch211-114c12.2)


Basic Information

Item Value
gene id XLOC_030066
gene name si:ch211-114c12.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 24128908 ~ 24135569 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058807
TCAGGTGACGTCACGGCTGCAGCTGTTCAGTCGGTGTGAATGTAATTTCACGGAGACCACTCGTTTTTTTCGACGGAGAAACCTAGATGTGACGACGAAAGCGACGGAGTGTTTGTTTTTTGGAAACGTTTACGGTTCTATTTTGGTCAGATGTGGACCGACGCTTAACAGAAGACGTTTGTTTGCTATCACGGCCTATCTGTTTTCAGTATCGCGCTACATCGGATAGGtgataaaactgaaaaaatggTGAGACCACAATCAGGATCTCCTCGTTCCAAACACAGGCCTTTCTCAGACAACTACAATAGCATGAATCATGAAGGGCGATATGGCCCCCCTTCAAGAAGCCAAAGAGGTTTCAGAGGGCCTCCTGGAAAAGCCCCTCCGAGTTGGAGAGTTCACAACAGTAGTGGATCCCAGCCCTACCCCAAGAGGCCTTCCTCACTCATGGGTGAACGCAGAGAGCGACCACACGGACAGTGGATGCAGAACCAGGATCACTTCCATCCGTATCCCAACTCGCAGGATTCACAGAGAGGCCGAAGGAGGCCATCACCACCCCGCTCAAGTCGCCCTCCCCCAGTACAGCACAGGCAATCCCCTCATACCTCTATACATGGACCGCCTAGCCACAGAGCACCAGTATTCCATGGAAACCACCCTAGACACACATCTCCATCTAGACACGGATCTTTTCATGGCCCTCCATCAGATCGACGGATTCCTTCACCTCATAATTCCTTCAGGGGTCCACAGCGACGCCCAAGCCCTCAGGATCATGACAGGAGCTGGGGTCCCACTCCCCGGGAGAGGCCTTTTGGCCGACCAGCACTTGGTGGGCACCACTGGAATGGCCCAGGAGGTTACCCTCATCCCCACAGTGGGGATTCGAGGTTCCCTGGCCCACCCCACAGAAAGCCCAGAGAATTTCATGGAAGGAGTTCATATCCAGAGAGGTGGTCTGCAGAGAGAGATCAACGTGCACCGCATGGAGACCTTAGAAGGGATGTTCGGCGCCCCAGCATGGAATTTGCACACAGAGGAGGAGGCAGTCCACACTCTCGGCCCCCTTACAGATCACCAGCACGAAGACCTGGCCCACCCCCACCTGGCTCGTCGATCAGACCTTATCCGCTTATGCGACTACAAGACAGGCAGATTGGACGACCAATGAAGAGGAGGAATCAAGATTTCAGACGGCCGCCTCCACTTAGCAGTTTGGAGCATGGGCCGCCAAAGCGTTTCCGCAGGGAACTGTCTGTGAGACCTCTTCCTCTTCGGGGCTTCAGAGGTCGTGGTTTGACCCTTGTTGATAAGAGTCGACTGCTTAAGGCACGAAGGTTCAGAGCAGAGTCGGTGACGCAGTTCAAACTCCCACCACCAAGGCCAAGATTATCAGACAGAGTCCAGAAACCCAAGCCTCAGACAACACCAAAAAATGGCAAAGATTCTTCAGGAGTGCCACTACGCAAGATGCCACTCAAAAAGATGCCATCTTCTAGAGAGTCATCCCCCAACACCGACTCCAAGACTGCAGTTGCTGAGAGGGACTCTGAATCAAAGGTGGAATCCCGTCGCTCTGAGAGCGCACACAGCTCCTCACCGATAGACAGGCGACTTTCACGTGACCTTGTTGTGGTTTCCCATTGGGAGGCAGGCCACAAGCCCAGTACTAGTCCCAGGAACAGTGCACCTTGGAGGAATAAGGCATCCAGGAGCAAGTCTGAGGAATCAGAATCTCGTGGAAATTTGACGTTGAATGAACGTTTCACCAAGCTGCAAAGTCCTCCTAGCTCCTCACaggaacagaaagaaagaaggtCTTCTGGAAGTCCACCAAAAACCCGGAAGCCGGTTGCATTTCAGAGGCCTGGTTTCCGCCCAGCTGTTGGAGTGAAGAGGCCGTCGGCACCTGATGGAGTTATCAGGAAACCTTTGATGagTACTTTGATTCCAAGACCAACCTTCAACCAGAAGTCCGTCTTCAAAAAGAGTCAGAGTATCATGTCAAAATACAAGAACTTGCAGACACTGCGGCATAAAGTGCCCCATCAGCGTCAAGCCACTAGCTATCGCCGGTGGTGATCCAGAACGatttcatTAGGTGAGGCGAGTGTCCAGAGTTGAGCGTCTCTCCAGAGCTGCCCATCTTCCTCACCTGACATTTTTGCTGTATGATAGTTTGAGCTAATCTCTGTAAAAACCACAAAGATCACCAAAGTATTTTCGTTTCTTCTGTagcaatgttttttgttttgttggcgTGCTATAGAGGTCAATTGAATCGTCTCGACTTGTGCATTAGTCTTATCAGAGTTTGGAAAAACAGAGACTAGTtgctttttcttttgtaatttaaatttaacctGTACAAATATATGTACTTTTTGCCATAATTTtgtgaaaatattattttttagctttggttAGAATAGTGTTTTTTTCACATGTAGTCGTAGCTCAAACATCAGTGTCTAAATAGCTGCTTTTTGAAAGTGACTGTTAAAAGACGCGTATCATGCGACCTGATCCCTGCTGAATGATGTACAAAGACTAGCTTTCATTTGATGAAGAGTTTTGAGAGTTTTTGTTGAGCTCCATGTGCTGATAAATGACGTCCCTGAAGAGTTTTGTTTGTGCAGCTCATAAAACACCTGTACATTCTTTGTAATCAGATACTTTGAATAAAACTGGAGTTGTCAGATACCTTCAAAtcaaaa
>TCONS_00058808
GCAGCTCACTGCAGTAACGCAAGCACAAATCAATCTCACAAGTGTGGGGCATGGACAGTGCATAGGAATTTCTTGGAAAATGGAAATATTTCAATGGACTTAAATGGAGAAGAATTTTACACAGCAGAGCATTTTCAACATTGAAATACTGCTGATGTGTCTTATCAAGTTGTACCCTCTGAAGAATTGACATGATTGGCTGGATGAAGGAAACAGATTGACTCTGTGGCTGGAAATCAGATTAAGAACAAAAATAACTCCTTTTATAAAGGCATGTACATTTACCTAATAGATGTTGAAAGATTTTGTCAGCATCTAATAAGATGACCATTTTCCAAAAATGAATACCCAATAATCATAGTAACTTTTTGTAACAAGAGACCTCTTCAAGTAAGAACCACGATGAGAAAGAAGACTTGCATTCATGACAGATCAACAAAGATGGGAACACACTGAACCAGTCATCACATGGGTGGTTTTTATGAAATCTTTAAACTTTCACAAAATATGCTCTGAATTGCCATGTTGATGACTTGCAGAGACCCCTTGTACCTCTACAACTCTCTTCACTGAAATGGAGGTTGTGCTGAAGACACAATACAGATTTGTCTAGTGAAATATGGTTACCAGATACCAACCATTCATTTGTAGTCCCCTCAATAGATGTTTTGGAACAGAAGATCTGCTTAAGGATTTATATGAAGATTCATGAAGATGCATATACAGAGAAGATAATTGAAACACCAGCAATGCACAAGCAGTGTGAAGTTTCATCAAGGAGAACTGGCCAAAAATGGTACAAATCAACAACGTTCAGAAGATTCTCTCAACGCCGAATACAGAACTGCAAACCTCCATTTAAGTCAAGAAATGAGTGTTCCAGcaggaaaaaatattttcagtctTCAATATGAGAGGATAGGTCAAGAGGAACGCATCTGGCTTGTCAACTCTGGAGAAAAAGGAAGCGCTCACCTGCTAATTGATTCACTTTTTGGAACGTAAAACCTGCATGGCGTCCTTCAGTCCACTCATTGAGTCTGCCAAGGTCTGTTATTCACATTAGCAAAAGGATGGCTGCTAAAGGCCAAGTTGAATCAGGGAAAATTATTCTACCAATTCAAACTGAACCATGGAGATGTTGGGCTTGCTTTGCTCTCCTCACCGATAGACAGGCGACTTTCACGTGACCTTGTTGTGGTTTCCCATTGGGAGGCAGGCCACAAGCCCAGTACTAGTCCCAGGAACAGTGCACCTTGGAGGAATAAGGCATCCAGGAGCAAGTCTGAGGAATCAGAATCTCGTGGAAATTTGACGTTGAATGAACGTTTCACCAAGCTGCAAAGTCCTCCTAGCTCCTCACaggaacagaaagaaagaaggtCTTCTGGAAGTCCACCAAAAACCCGGAAGCCGGTTGCATTTCAGAGGCCTGGTTTCCGCCCAGCTGTTGGAGTGAAGAGGCCGTCGGCACCTGATGGAGTTATCAGGAAACCTTTGATGagTACTTTGATTCCAAGACCAACCTTCAACCAGAAGTCCGTCTTCAAAAAGAGTCAGAGTATCATGTCAAAATACAAGAACTTGCAGACACTGCGGCATAAAGTGCCCCATCAGCGTCAAGCCACTAGCTATCGCCGGTGGTGATCCAGAACGatttcatTAGGTGAGGCGAGTGTCCAGAGTTGAGCGTCTCTCCAGAGCTGCCCATCTTCCTCACCTGACATTTTTGCTGTATGATAGTTTGAGCTAATCTCTGTAAAAACCACAAAGATCACCAAAGTATTTTCGTTTCTTCTGTagcaatgttttttgttttgttggcgTGCTATAGAGGTCAATTGAATCGTCTCGACTTGTGCATTAGTCTTATCAGAGTTTGGAAAAACAGAGACTAGTtgctttttcttttgtaatttaaatttaacctGTACAAATATATGTACTTTTTGCCATAATTTtgtgaaaatattattttttagctttggttAGAATAGTGTTTTTTTCACATGTAGTCGTAGCTCAAACATCAGTGTCTAAATAGCTGCTTTTTGAAAGTGACTGTTAAAAGACGCGTATCATGCGACCTGATCCCTGCTGAATGATGTACAAAGACTAGCTTTCATTTGATGAAGAGTTTTGAGAGTTTTTGTTGAGCTCCATGTGCTGATAAATGACGTCCCTGAAGAGTTTTGTTTGTGCAGCTCATAAAACACCTGTACATTCTTTGTAATCAGATACTTTGAATAAAACTGGAGTTGTCAGATACCTTCAAAtcaaaa
>TCONS_00058809
CATAAATTGGTCCTTCTGCATTTACAGCAATACAATTGGGTTCATGAAGACTGTTTGAGTAATTTAGTTGAAGTGAACCGAGGAGAGAAAATGTTACACAAGGCACAAGTCTATTCCACTTTGAAATCAGATAACATTTGTGCATGCCTTTGCATTTTCTGAATGCTTGATGATTGTTTATTCAATGCTTTTGCATCCAGACCATAAGCAGCAATAGTTCACGCATTGTTGACTTCTTTTCAGCTCCTCACCGATAGACAGGCGACTTTCACGTGACCTTGTTGTGGTTTCCCATTGGGAGGCAGGCCACAAGCCCAGTACTAGTCCCAGGAACAGTGCACCTTGGAGGAATAAGGCATCCAGGAGCAAGTCTGAGGAATCAGAATCTCGTGGAAATTTGACGTTGAATGAACGTTTCACCAAGCTGCAAAGTCCTCCTAGCTCCTCACaggaacagaaagaaagaaggtCTTCTGGAAGTCCACCAAAAACCCGGAAGCCGGTTGCATTTCAGAGGCCTGGTTTCCGCCCAGCTGTTGGAGTGAAGAGGCCGTCGGCACCTGATGGAGTTATCAGGAAACCTTTGATGagTACTTTGATTCCAAGACCAACCTTCAACCAGAAGTCCGTCTTCAAAAAGAGTCAGAGTATCATGTCAAAATACAAGAACTTGCAGACACTGCGGCATAAAGTGCCCCATCAGCGTCAAGCCACTAGCTATCGCCGGTGGTGATCCAGAACG

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8522 No description available

Ensembl:

ensembl_id ENSDARG00000028542

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058807 False 2723 mRNA 0.49 10 24128908 24135569
TCONS_00058808 False 2282 processed_transcript 0.40 7 24132301 24135569
TCONS_00058809 True 742 lncRNA 0.46 5 24133480 24134771

Neighbor

gene id symbol gene type direction distance location
XLOC_030065 tp53 coding upstream 31103 24086227 ~ 24097805 (+)
XLOC_030057 NA coding upstream 44679 23901787 ~ 24084229 (+)
XLOC_030064 gps2 coding upstream 54370 24063046 ~ 24074538 (+)
XLOC_030063 gabarapa coding upstream 67102 24059598 ~ 24061806 (+)
XLOC_030062 ctdnep1a coding upstream 72112 24047292 ~ 24056796 (+)
XLOC_030067 slc25a15b coding downstream 20601 24156170 ~ 24163572 (+)
XLOC_030068 mpdu1a coding downstream 43738 24179307 ~ 24185865 (+)
XLOC_030069 NA coding downstream 65096 24200665 ~ 24228356 (+)
XLOC_030070 atp6v1aa coding downstream 110113 24245682 ~ 24259992 (+)
XLOC_030071 NA coding downstream 125981 24261550 ~ 24278326 (+)
XLOC_030061 NA non-coding upstream 118009 24008862 ~ 24010899 (+)
XLOC_030058 CR391924.1 non-coding upstream 218459 23910333 ~ 23910449 (+)
XLOC_030056 NA non-coding upstream 243737 23873557 ~ 23885171 (+)
XLOC_030055 NA non-coding upstream 303378 23822572 ~ 23825530 (+)
XLOC_030074 NA non-coding downstream 205108 24340677 ~ 24450520 (+)
XLOC_030075 NA non-coding downstream 333902 24469471 ~ 24472076 (+)
XLOC_030078 NA non-coding downstream 680756 24816325 ~ 24835317 (+)

Expression


Co-expression Network