XLOC_030068 (mpdu1a)


Basic Information

Item Value
gene id XLOC_030068
gene name mpdu1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 24179307 ~ 24185865 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058811
CAAGCATAAATATTTTTGACTAAATgttaaaaaggaacaaaagtcACTTGTTTATTTTGCTACAGGACCACCAACAGAAGTGCCTGAACTATGGACGCGTCTGACCAGGAGACGATGATGCCTCCGCTAAAGGaatttttgttgacattttttatgCCAGAAAAATGTTATGACCAGTTCTTCTTTTACTTCAACTTCATGCACGTACCCTGCCTAAAGATTGTCCTGAGTAAGACTATGGGAATATTTATTTTGATGGGAATTGTAATTGCTCCACTTCCCCAGATCTGCAAAATACTTTGGTGTGGAAGTTCATACGGACTGTGTCTGACCTCGGTTTTTCTGGACCTGATGGCCATCTCCACCCATGCAGCTTTCTGCTACACTCAAAACTTTCCCATTGGagcCTGGGGGGAAAGTTTGTTTGCAGTGATCCAGATTGCTCTCCTGGCTTTGCTTATCCACCACCATGAAGGCAAAACCATAAAAGgtATATTTTTGCTTGCTCTGTTCTGTGGCGTTATGTTCCTCTTGGCTTCACCTTTGACCCCTGTGGCAGTGGTTTGGACTCTGTATGAATGGAATGTGCTGTTTGTCGTTGCTAGCAGGtttttccagGTAGTCAGTAACTTCAGATGTGGACATACGGGACAGTTATCTATACTTTCTGTTTTCCTGGTGTTTCTCGGCTCTCTAGGACGAGTCTTCAGTTCCTTGCAGGACACAGGTTTTTCTTTCTCAGCTCAGATGCAAACATTGGCCTGCTGTTGCAGTTGGTTGATTCTTGCACAGATCCTGATGTACTGGAATAAATGCACAACAAACAGTAAGAAAGAAGCTCAAATGAAGAAAGACAAGGCTGAATGAAAGAGGTAAAAGAAACTGCCTGTATGCAGACTGTCATATCGGCTTGTCAAGTGTAATGTcacacgaagcggcttccgggtccaagcactcaAAATGAATAGGGAGActaaacaaatggtaataataaacgtttacaaagcaatgtaatactttcgacaaactaatatatacagtataaatccatgcctaatatcagatggccagaaagtgatttttttgttttttgaaattgattttttttaaatagttaaaatattggtgtctgagaTGCTTTAAGTCCAGagactttaatgtgtgatatgactaaaaaggggTAATAAACAAGTATTTTCTCCATTCAAATGAGTTGCGGCTTCGACTCAGATACAGTTTTCAATATGTCACCAATACATCACGACTTAACGAGCGGATAGCCTGCTATAGTACTGTGTTTGAGTACTAAATTGAAAACTGCTTCAAAAATCATTATTTAGTCTAAGCTCATGTCTGATCTTTCAATCCAGATGCATAGATTGACACATAAGCATTAGTTAGACCTCTTGCTGtgcaaaaatattatatgtatttgtCAAGATCAGCTAGTGCATTGTGATGCACAGCTACCAAAGAGATCACATTTCACTCCTAACTGAAAATACTGCCATAACATAAGACTTTTGCTGATTTTTATCAAGATTTAAAGATAACATTGAATAAAATTCCTTtcattttaagtatatttaacCAAAGTTCtgctaatttaaaacatttagaaagAGATCAAAAGGTATCCATATGAAATCCATATAAACCAAGTGGTTTATTACACATCTctgaaaaaataatcactttattATGAGCagaattgatttttgttttttgttagtcacacataaatgccaaccaGCAAACAGAAGCTCAACTATAACAGTTTGACACATGATAAAAAACATCATTGGTTGTTGAGGAAGATGATCGTTCTGCTTGACATGCGAGGATAGACGTTGGTTGTGCATCAAGCATACAAAGCTCAAACTTTTATGGCCAAATTTAAATGCTGTAAACACAAATAGCTTAATAATGATTAtatatgaatgaaaacacacagggtTTGATTTTGTGTTGCTAATCAAATCAATGCTGTTCAGAAATAGCTtgattattttcataattataaTTGTTTGCTTAAGCAATGCCCATTTTATATTAAGTTGTAGCTACATAGTTTCATCTCAGTATTGATAACAAATTCATATTGTTTTTATCCTGCataatttgattatttaactTACATGGAACATACtaactaaataatatttattagctTGCATATATGCTGACATAAATGCTGTTGTCAGTGCAGGGAATGAATGTCATGGTTCAGTAAAAGAGAACCCATTGTGTTGTCTGATCAATCTCTGTtggaatattaaaaataatgtccACACACAAAAAGCCCTTTAACAAAATCAGTAATCTATAAAGATGCCTTGGAATTAAAAAGGGAAAGATTAAATGGTCATATCACAAGTGATCCTCAGTGTGGCAGTAGTAATGAGCTCAATTCAGCGTGTGAGCATTGCAAAACTGCACCACTGTGTGGCAGGAGAGTTGTTTTCTactttaatttacatatttttgagTTCTGTATCTAGTTATTACAAGTTTAGTATTATTTTCTATCTAATCATGACTATTTGTTCTGTATTATTTTGGATCCACACTGCAGTATATGCATTTGCACTCTTTAAAAAGAGTTTGTGAATGTTTGTCTCATACAAAAAAGCTATGATCCTTTAAACTGCACATTTTGTCTGTAATAAAATGTTTCTGATGGCTTAAA

Function

symbol description
mpdu1a Predicted to be involved in oligosaccharide biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain and ventricular zone. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation If. Orthologous to human MPDU1 (mannose-P-dolichol utilization defect 1).

GO:

id name namespace
GO:0009312 oligosaccharide biosynthetic process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040912-9 Predicted to be involved in oligosaccharide biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain and ventricular zone. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation If. Orthologous to human MPDU1 (mannose-P-dolichol utilization defect 1).

Ensembl:

ensembl_id ENSDARG00000035562

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058811 True 2689 mRNA 0.36 7 24179307 24185865

Neighbor

gene id symbol gene type direction distance location
XLOC_030067 slc25a15b coding upstream 15735 24156170 ~ 24163572 (+)
XLOC_030066 si:ch211-114c12.2 coding upstream 43738 24128908 ~ 24135569 (+)
XLOC_030065 tp53 coding upstream 81502 24086227 ~ 24097805 (+)
XLOC_030064 gps2 coding upstream 104769 24063046 ~ 24074538 (+)
XLOC_030063 gabarapa coding upstream 117501 24059598 ~ 24061806 (+)
XLOC_030069 NA coding downstream 14800 24200665 ~ 24228356 (+)
XLOC_030070 atp6v1aa coding downstream 59817 24245682 ~ 24259992 (+)
XLOC_030071 NA coding downstream 75685 24261550 ~ 24278326 (+)
XLOC_030072 zdhhc23a coding downstream 96705 24282570 ~ 24294160 (+)
XLOC_030073 ctsll coding downstream 120012 24305877 ~ 24309667 (+)
XLOC_030057 NA non-coding upstream 95078 23901787 ~ 24084229 (+)
XLOC_030061 NA non-coding upstream 168408 24008862 ~ 24010899 (+)
XLOC_030058 CR391924.1 non-coding upstream 268858 23910333 ~ 23910449 (+)
XLOC_030056 NA non-coding upstream 294136 23873557 ~ 23885171 (+)
XLOC_030055 NA non-coding upstream 353777 23822572 ~ 23825530 (+)
XLOC_030074 NA non-coding downstream 154812 24340677 ~ 24450520 (+)
XLOC_030075 NA non-coding downstream 283606 24469471 ~ 24472076 (+)
XLOC_030078 NA non-coding downstream 630460 24816325 ~ 24835317 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000339_02283051_02288143 MPDU1A coding CI01000339 null 2282897 ~ 2288265 (+)