XLOC_030069


Basic Information

Item Value
gene id XLOC_030069
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 24200665 ~ 24228356 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061693
GGTGTGACCCCAGCCGTAGCTGTCCATCCTCGGGCTTCCACCTGACCCCTGAGCCGCGGCAGCCGCCACTATCTTCCCTGATGCGGCTGAACTTCCCTGACGCTGTGTCTTCCAGCCCAGTGAGTCGTCTTCTCTAATGACCGCAGGTGTGAGTAGTTACTCCTTATCACCCAACCATCCATACACATTAGTTTCTATAGGCATCACTTCACACTTCTATTGTGAGCCCTGCATCCCCAAACACAGCCACTACGACTGACCATCAGTAAGAAGTGTGACAATGAACTCCCCCCCTCTGAGTTTAGCTTGTACTAACACATCATCTGAATGTTCCTATAAGACCTCCAAAAAAGCTGTTATAAAAATGACTTTATTAGGCTTCCTTTAACAACTTATGAAAAGTTACTGTTCAATAGACGGCATTACTTTTTAAACCAGCGAACAAATGCATCCTAAACTGGATGGGGAGTTTCTGTAGCCCTTTCCCTTCTCTTTTGTTCTGGTTTCTCCCGTTTAATCATTGATGACACCTATAATCCAGACTGAGGGTCATTTTGCTAATAGAGTTGGAGcatatttctaatttatttaggCTTGTTCTGTTTGTATCAGCTACCAATGTAGTAACAGATTTGAGGATGCTTAAAGAATGTAGAGGTGCAGAGCTCATTTGTTATGCTTACATTATTGGAACATAACTCAACGAcacaataaaacttttattttgaggtttgctttaaattaaattgaGTGAATTTTCATCTATAAAACAGTAATGCAAGCATCTACTAACCTAGTTTTGAATAACTTTTTGGGAAAATAAAATGAAGGTtcgaaatgagcatttttctcaggatGCCTAAAG
>TCONS_00058812
GCTGAACTTCCCTGACGCTGTGTCTTCCAGCCCAGTGAGTCGTCTTCTCTAATGACCGCAGGTCTTGGGCATATCCTGTTGGCCGAAGCTGAAAGGCTGTTCCAGGGCCAGGCACTTACAGTACTGAAGGACAGCAATCAGAAGAGTGAACATGGGCAGCATCCATGACCAAATCCCCATACATGTTCATGACCTGGGTGACGCAGAGAGTTACAGATGTAAGAGAGTGCAAGCTCAGCACAATCCCAATACTAGGGCCTCCCATTCATCAAATAAAAGAGTCATAACTGTGAATATCTTCTCTATACAGTGCAGACAAACAGATGTTAAAGACTGTGCCATCATAAAATGATTGTGaaagtattattataaaattaatatactACAAAGAAAGAG
>TCONS_00058813
CATTATATCCAGCTTGGGCATATCCTGTTGGCCGAAGCTGAAAGGCTGTTCCAGGGCCAGGCACTTACAGTACTGAAGGACAGCAATCAGAAGAGTGAACATATATCTCTGTTCCCTGCAAACGGCCTTCTGGGTCCCCATTTAACAACGAACGTCCCGGCGGCCTCTGGAAATGTTGACTGCCAAAGTAACGACGTCTGTGACATCTGCGAACCCTCCTGTATCCCATAGTTCCCGCCCATTTGGCTCGTTGGCGCCAAGTTCTCCAGTGCTGGGCCAGACGAAAACGAATGCTCAGGTACCTTCGGCCCCGATTTGGCAACCGAGCTAGCCTTCTCACTTTGAGCAGTCTGGGTCTCCTCTGCGCCATGCAGTGGGTAAAGTCATCAGTAACCCTGACATCCATTTCTGCCACCTGCGAATGCTCCGGTGTTCCCCAATCCTTGTCATCCCCTTGATCTTGAAGATGAAAAATGCCTTGATCCTCCAGATCTTCTCCACTCTCCATCTCCACATCatcctcttcttcttcctcctcctcctcttcctcgtcCTCCACCTCGGGGACTGTGTAGTCTGCACCCCACATTCTGACGTCTTCCTCTCTGCGCCCCAGTTTAAAATGGGCTGGGCTCGGGGCATGTTGAGCCATGGCTGGGTTCATTAAATGACCCCCTCCAATGGCACCCCCACCCCCGGCGCCCTCCTGCCCAGCAGTCAGCGTCAGCTCATTAGACCAGTGTGTTTGAGCCAGGCTGCTGCCACTGTCTCTCATGATCCAGGAGCACCCTACAACCTGCGCCAGCCTGCCTCCTTCACTAATGCATGAAGAAGAAAATTTAAAAACCATGTCAGTGTCATCTCTTAacttgtcaaagatgccaaagaAAAACCTTTAAAGTATCAAACAGCGAAGTGAGAAATCTAGCTATTCTTCTTGAAAACACTCTTACTTAAGCTATAAACCGTTACTTTTATCAGCTATGGGCGCTCTTTTTTTATCACTATGCCCAACCTTgaacttcctgtttgttttcccGCAGTAAGCCATTTTGAGTGTGGCAACACCTGTTAGTCTAATCTCTAAAAACAGCCTGGTTCAAGAAGTAAAATCAAATGAAGCAAAATAATTATAACAGCATACCTAGATGCACCACatgaatgaataatactgctTATTACAGACAAGGCAATAAACACATTGCTGAAAACATTTCATGTCTCAGTTGTAAATGTTGGAGTCTAC

Function

GO:

id name namespace
GO:0046040 IMP metabolic process biological_process
GO:0006188 IMP biosynthetic process biological_process
GO:0006189 'de novo' IMP biosynthetic process biological_process
GO:1901135 carbohydrate derivative metabolic process biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000096970

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00061693 False 865 lncRNA 0.41 2 24200665 24203402
TCONS_00058812 False 396 lncRNA 0.44 3 24202623 24222523
TCONS_00058813 True 1246 lncRNA 0.48 3 24219601 24228356

Neighbor

gene id symbol gene type direction distance location
XLOC_030068 mpdu1a coding upstream 14800 24179307 ~ 24185865 (+)
XLOC_030067 slc25a15b coding upstream 37093 24156170 ~ 24163572 (+)
XLOC_030066 si:ch211-114c12.2 coding upstream 65096 24128908 ~ 24135569 (+)
XLOC_030065 tp53 coding upstream 102860 24086227 ~ 24097805 (+)
XLOC_030064 gps2 coding upstream 126127 24063046 ~ 24074538 (+)
XLOC_030070 atp6v1aa coding downstream 17326 24245682 ~ 24259992 (+)
XLOC_030071 NA coding downstream 33194 24261550 ~ 24278326 (+)
XLOC_030072 zdhhc23a coding downstream 54214 24282570 ~ 24294160 (+)
XLOC_030073 ctsll coding downstream 77521 24305877 ~ 24309667 (+)
XLOC_030074 NA coding downstream 112321 24340677 ~ 24450520 (+)
XLOC_030057 NA non-coding upstream 116436 23901787 ~ 24084229 (+)
XLOC_030061 NA non-coding upstream 189766 24008862 ~ 24010899 (+)
XLOC_030058 CR391924.1 non-coding upstream 290216 23910333 ~ 23910449 (+)
XLOC_030056 NA non-coding upstream 315494 23873557 ~ 23885171 (+)
XLOC_030055 NA non-coding upstream 375135 23822572 ~ 23825530 (+)
XLOC_030075 NA non-coding downstream 241115 24469471 ~ 24472076 (+)
XLOC_030078 NA non-coding downstream 587969 24816325 ~ 24835317 (+)
XLOC_030079 NA non-coding downstream 645449 24873805 ~ 24879565 (+)

Expression


Co-expression Network