XLOC_030075


Basic Information

Item Value
gene id XLOC_030075
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 24469471 ~ 24472076 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061433
agtaccaacatgttacaaatgagaattttccccacaaattctttgcaaaactggaccaccacctatttcatttgatgacaattttaatgcaaacagcatccaaaactggcaagacagcagataccctggctaatcttttaaaggttttatgatgagcaggaactgaatgatgtcagttcatgacggactactgttatcagaggtcttttggtcttgctgcgtgagcgtgacttaagattctttaggaacaccatgattgataatcctgctgactgaagatgctttattggccctgcattcactgagggtctctgttgtcctgaagaatgaattggacaccacccacagcacactttcagacctttcttgtcttgtatggattaatcagactccagctcgtgacgatcccacatccgactactcactgtccttcacttacttcccggagcaccagagcacctcaccttaaagaagagcaccgtttacaccccattcacgttgtaaataaagcaccctccggggacttgtctgtaaacttatccaactgtgttgctgttttccctctgcctcgctactatatatatatatatatatatatatatatatatatatatatatatatataatctgctctccgttaaacagaaattgggggaaaaaataaatgggggcgaataattctgacttcaacgagatatatatatatatatatatatatatatatatatatatatacagtttctgtgtagtttacactaaacgagtcacttcacagaatgtgcacttattattttttttttaacgaatgccttaagagtaagttttacacttaatgtattattaaattttatcaaacttatagttgttttttcttgaggctcttatgtctgatatcatatttacattgtgggtaatttttattaatttcagaatagtgttcattttcaatctctttatgtctaatagtttttattgttttaagacatttgtaattgcataggagacaaatttgaaagtactgctggacattttttctttaacaataaatgtctaaaatggtattgtctgtgtgttttaaattacagatttattttgacagatttatggggtttaaagattaaaataatggctaattttatttgtgaaactgacgatggagaagttaattttaaaaaatgctatcaaaatgaATGAGCGGGGTGACTAAGTATGTAAAggtgagataaataattaaaaataagttaattgctattaaaatgtatgagctgggtgatttaagtatttaaagttgaaagaaattaaagcaattaagttaattggtattaaaatgtatgagctgggtgactaagtatttaaagtttggaaaattaaaacaattaagttaattgcaattaaaacgtataagctgagtaacttgggtattttaagttaggtgaagtgtcttgcatgagtacaacaaactcaaaacttaatgtttctgtttacttaaaatagataatttcataacttaaaaaatttgacgtaactgattacctcaaattt

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0007517 muscle organ development biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0000387 spliceosomal snRNP assembly biological_process
GO:0030490 maturation of SSU-rRNA biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:1901861 regulation of muscle tissue development biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0016202 regulation of striated muscle tissue development biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0048634 regulation of muscle organ development biological_process
GO:0048641 regulation of skeletal muscle tissue development biological_process
GO:0010002 cardioblast differentiation biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0030684 preribosome cellular_component
GO:0030686 90S preribosome cellular_component
GO:0030687 preribosome, large subunit precursor cellular_component
GO:0032040 small-subunit processome cellular_component
GO:0030688 preribosome, small subunit precursor cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0005634 nucleus cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0005488 binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00061433 True 1542 lncRNA 0.32 4 24469471 24472076

Neighbor

gene id symbol gene type direction distance location
XLOC_030074 NA coding upstream 18951 24340677 ~ 24450520 (+)
XLOC_030073 ctsll coding upstream 159804 24305877 ~ 24309667 (+)
XLOC_030072 zdhhc23a coding upstream 175311 24282570 ~ 24294160 (+)
XLOC_030071 NA coding upstream 191145 24261550 ~ 24278326 (+)
XLOC_030070 atp6v1aa coding upstream 209479 24245682 ~ 24259992 (+)
XLOC_030076 dgcr8 coding downstream 48361 24520437 ~ 24532386 (+)
XLOC_030077 atp6v0a2b coding downstream 71786 24543862 ~ 24567869 (+)
XLOC_030078 NA coding downstream 344249 24816325 ~ 24835317 (+)
XLOC_030079 NA coding downstream 401729 24873805 ~ 24879565 (+)
XLOC_030080 rhbdd3 coding downstream 410557 24882633 ~ 24886597 (+)
XLOC_030069 NA non-coding upstream 241115 24200665 ~ 24228356 (+)
XLOC_030057 NA non-coding upstream 385242 23901787 ~ 24084229 (+)
XLOC_030083 NA non-coding downstream 776122 25248198 ~ 25249676 (+)
XLOC_030085 NA non-coding downstream 839187 25311263 ~ 25314752 (+)
XLOC_030090 NA non-coding downstream 1228949 25701025 ~ 25710432 (+)

Expression


Co-expression Network