XLOC_030076 (dgcr8)


Basic Information

Item Value
gene id XLOC_030076
gene name dgcr8
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 24520437 ~ 24532386 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058818
CTGCTCAGCTCTGCAGTGAAGATGGCGGAGAGAAGACACGGCCATCTGAAGCCAATCAGCAGAAAATGCCTATGATTGCATGCTGGCTTCAGTAGACGCGTTGTCTAATTGGTACTGACAGAAGATCTGGCCTCCTGGGATGGACAGTGCTTAGATATGGGAACCATTTAAGCTGAATGCATTGTGATTTCCAATAATTGAGACAGTAATTTCTAAAAAGCTGTCTACATTAatgaaaagaacaatgtagtcaGCTTAGCATATTCAACCATGTACATGACTATTACTAAATAGGAGTTTCAAGCTTTATAATGTATACATGCATGTGTTAGGGCTGCAATTGTTTTAGTTAAATCGGGCACATCTCTCCCCAATTGTGTTCTTGTATCAGTTTTAGCATAgctatttttaagaaattaaatatgGATGTAAATGAGATTTTACCTCCCCTCCCATTGGAGCCACCTGACGCAGTATTGGCGGGGAATGATTACAGTAAAGCACCTCCACCACCTCCCCTGCAAACGTCCAGTGACGCAGAGGAAATGGACGTTAGCTCTGGTGGTGATGGACACCAACACACCCCAGCAGTGGACAGGGACGAACAGCTTCTCCTCAACAAACGCACATTGTCTGTTAGTAGCCGCCCATCAGATAGTACTGACCCCATGACTACTTGCCCTAGAACCGCTCGCCATGCTCCCCCTGTTACCAAGTTTTTACCTGATCTCAAACTCCTCAGAGACGTAAAGATCAGTGTCAGCTTTTCGGACAGCAGTAAGAGCAAAGACAGGAAGGTGTTGTACACTGGTTTTGGGCAGGTTAGCGATGAAGATCAGAGCCTAGAGAGCATAAACGGAGAATTGCATGATTCTGTAATGATGAGAAGCGTGCCTGGCAGTTCAGCTATGAGCACTGGCTTCATGGGTTTAGCTAGAACTAGAGAAGAGCTGGAGGCAGAGCAGGAGAACAAGGTTGAGTTCGCTGTGCTGGATGACCTGGAAGATTTCAGCGAGAACTTTCTGGAAGATGGAGAGCCAAGTGCTTTCAGGTCTCAGATGATAGTTCAGCAGGAGCAAGTGCACGAGGAGGACCTGAGTTACTCCTATGAGGAGGACTTTGACAATGATGTAGATGCCCTGTTGGAGGAAGGCATGCCCATGCCCAAGAAGAGGCGTGTGGCTGAAGACAAATATGCTGGAGACAGTGATCACCATTCAGACGGGGAGGCCGGAGTTCAGCCTATGATGACCAAAATTAAGACCATTCTTAAGAgTCGTGGTCGACCGCCAACTGAGCCATTACCTGATGGGTGGATCATGACATTCCATAACTCCGGCATTCCAGTCTACCTCCACCGGGAAACCAGAGTTGTAACCTGGTCTAGACCTTACTTCCTTGGAACAGGAAGCATTAGGAAACATGACCCACCAACCAGTAGCATTCCCTGCCTGCActacaagaaaatgaaggaaCAAGAAGAAAGGGAACAGAATGGAGAGGTGACTCCGACAGCGGAGATTTCTCCAGTCAAATCTGGGGAGGAGGGTATCTCACTGGAGCGAGCCGATGAGCCTGACTCCACTGCCACTGAAGAGCCCACCGGCAGACCAACATCAGAAGATCCGGATCTTGACCTCATGGAGCCAGGAGGGTCTTCTATAGAGGGGAAGGATGGCCAAACCGGGGATACTGCACAGGGAGCATTGGGCCAGGTCAAAGCCAAGGTGGAGGTCTGCAAAGATGAGTCTATTGAAATTGAGGATTTTAGAAGCTACCTAGAGAAGTGCTTtgattttgagcaagtgacagtGAAGAAGTTCCGCACATGGGCTGAGCGCAGACAGTTCAACAGGGACATGAAGAGGAAACAGGCTGAGTCTGAGAGGCCCATCCTACCAGCCAATCAGAAGCTCATCACGCTGTCTGTTCAAGATGCCCCCACAAAGAAAGAGTTTGTCATCAACCCAAATGGGAAGTCAGAAGTGTGCATTTTACATGAGTATATGCAAAGAGTACTCAAAGTGCGACCAGTTTACAACTTTTTTGAATGTGaaAACCCAAGTGAACCCTTCGGAGCCTCAGTGATTATAGACGGTGTTACATACGGCACTGGAACAGCTAGTAGTAAAAAACTTGCCAAGAATAAAGCTGCTCGAGCAACACTGGAAATCCTCATTCCTGACTTTGTGAAGCAGACGTCTGAGGAGAAGCCCGTAGAGGGAGATGAACTGGAGTATTTTAATCATATCAGTATTGAAGATTCAAGGGTGTATGAGCTGACCAACAAAGCAGGTTTACTCTCACCATATCAGATCCTTCATGAGTGCCTTAAGAGAAACCATGGCATGGGAGACACCAGCATCAAGTTTGAGGTGATTCCAGGAAAGAACCAGAAGAGTGAATACGTCATGACATGTGGGAAGCACACTGTGCGCGGCTGGTGTAAAAATAAGCGAGTCGGAAAGCAGCTGGCGTCACAGAAGATTCTCCAGATGCTTCATCCTCATGTGAAGAACTGGGGCTCACTGCTGCGCATGTATGGCAGAGAAAGCAACAAAATGGTTAAAAAGGAGAATTCTGATAAGAGTGTGATTGAGCTTCAGCAGTATGCCAAAAAGAACAAGCCAAACCTTCACATCCTCAACAAACTGCGAGAGGAAATGATGAAACTGGCTCGAGAAAGGGAGGAGGCAAGAAAAAAGCCGAAGATGACTATAATGGAGTCTGCTCAACCTGGCAGTGAACCTCTGTGTACTGTTGACGTCTAGCAAACCCTCGTCCAGCATGTTATGATAGCACTGACCAATGGTAACAGTTGTGTAACAAAAGGTCATCGTACCATTACTGACTTATGCATTCATTTCCAGTGCAAATGGCAATACtagttacatttttattcaaattttgaGCCCAATTCAGTCATTGTCCATAACATTTGTGTTCGGTAACGGTTGTATACATGCACTGCGGGCTGATAGAACGAGCATCAAATACCTCCAGATGCACTTCTGCACCTGAGAGTGCACAAACATAATGACGGCGTTTGACGTCATAGCCTACACAAATTTAGGTATGTGGTAAAATAATGTATGTTAAATAagtattgtgcttttttttttttttttttacatttgtggcttttagatgttaataaaaatattgttttcccTTTCTTAACCACAAATTTCatttcatattttcaatgaaacTACAGATTTCACATGGCTGACTGTATCTCTGTAATGATGCATTTGTCATTGGTTCATTTATGTCAGCTGCTGTGGCATGCAGTGCACGTTTTATCTGGAAAATAGGGTTTATTATGACttaggtgtgtgtgtggtatttCAGTGGCTATTTTTAGTTATTGGCACGTGAagcattttaaatgttgtttattttaaagcatttcatGTTGTGCACACTGCCAACTGCTGTTGAGAAATGCACTAACGTTGAAAGCATTTGCTCGTGAAGTGATCAcgcttttagtttttattaaagaTGATGCATTTAGGCGGTCACTTTGACCAACTGCTCTACTTGTTCAGAAAGCACTGCAGAGAAAAGGCAAGCACAAGTGTGTGAGGTACTGTAGGTTGCTGATTAAGAGAACATCAGGGAGATAACATGCTcgtgtatttctttttttgtaaggtttttttttttttttggttacattTCCGTTCTAGAGACTGGTTGGTAATCTTCATTAGGAAATAAATAAACGTTGCCTTAGTTGTCCCCATCGTTTCAGTCGTGGTACCTTGTGTTTCAAAAGGGAAACGCTTCACTTGAGTCTGCATTTGTGATGCTGTATGTTACGTATTTGCCGTGGAGTGACGCTTGCTTTCTTGCATTGATATTTTAGAGGAAATGCCTTCTACGCATGTGCTTTTTTGCATTTGTCTTAAATATTCCTGTATGGTTTTGTGGACATTTGCTAAAGTTATTGTGTGCAGATCTTTATCACGTTGGTATATGAAATAGATTTAATCATATTCTTTACTTCAAAGGGTAGAGCACCTACAAAAAGAAAGGTGGTGACTTCGTACCTCGAAGAAAATCAAACCATGCTTATATTCAATAGCTTGAAGAACAGTGTGAACCAAAGCTTTAAGTCTTATGCATTTTTATAGAATATTGCTGCATAGCTactcataaaaaaatatatatatataacttacatGCATTGAACAATATAGAAAAAAAGATGCAATAACTGCTGAAATAAAATATGGTCCCTGTTTGAAGAAAACTACTCcgatgagagaaaaaaaagatcaaacaTTTCTGGCCTTAAGATTTTAAGGAAGATAAAATAATCTGGTTTTCTTGGGACAGCGACTAAACACTGCAGTGCACTGTCATTTTGAACTTTAGTATTTTAGTTTGTGTGCTTCTGAATGTTTACTGCGTTTGTGAAGGATCTTTCCTGTTTTTCATGAGCACAAGGCTGCTGCCACACAGAGAATATGCTTTCCCACTTAACGTCTGGAGTGTACGACTTGTCCTGTTCAGTCTTGCCAAGTGTGTATTAGCCGTATGAAGAGATGTGTGCTTTTTAGTCACTGTTGTCGAAGGGATGGTAATGTTGGATGATTTAGCTGCAAGTATCGCTGcctaaacaatgttttaatgtgaCACATGATCGCTGATACGCAGTGATTTGTTTATGCAAATAAATTGATGCCCAGAAA
>TCONS_00058819
TCCACCACCTCCCCTGCAAACGTCCAGTGACGCAGAGGAAATGGACGTTAGCTCTGGTGGTGATGGACA

Function

symbol description
dgcr8 Predicted to enable double-stranded RNA binding activity and primary miRNA binding activity. Predicted to be involved in primary miRNA processing. Predicted to be part of microprocessor complex. Orthologous to human DGCR8 (DGCR8 microprocessor complex subunit).

GO:

id name namespace
GO:0031053 primary miRNA processing biological_process
GO:0070877 microprocessor complex cellular_component
GO:0004525 ribonuclease III activity molecular_function
GO:0042802 identical protein binding molecular_function
GO:0070878 primary miRNA binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003725 double-stranded RNA binding molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3421 Predicted to enable double-stranded RNA binding activity and primary miRNA binding activity. Predicted to be involved in primary miRNA processing. Predicted to be part of microprocessor complex. Orthologous to human DGCR8 (DGCR8 microprocessor complex subunit).

Ensembl:

ensembl_id ENSDARG00000035564 ENSDARG00000081904

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058818 False 4703 mRNA 0.43 14 24520437 24532386
TCONS_00058819 True 69 miRNA 0.57 1 24521682 24521750

Neighbor

gene id symbol gene type direction distance location
XLOC_030075 NA coding upstream 48361 24469471 ~ 24472076 (+)
XLOC_030074 NA coding upstream 69917 24340677 ~ 24450520 (+)
XLOC_030073 ctsll coding upstream 210770 24305877 ~ 24309667 (+)
XLOC_030072 zdhhc23a coding upstream 226277 24282570 ~ 24294160 (+)
XLOC_030071 NA coding upstream 242111 24261550 ~ 24278326 (+)
XLOC_030077 atp6v0a2b coding downstream 11476 24543862 ~ 24567869 (+)
XLOC_030078 NA coding downstream 283939 24816325 ~ 24835317 (+)
XLOC_030079 NA coding downstream 341419 24873805 ~ 24879565 (+)
XLOC_030080 rhbdd3 coding downstream 350247 24882633 ~ 24886597 (+)
XLOC_030081 mrpl41 coding downstream 540508 25072894 ~ 25075179 (+)
XLOC_030069 NA non-coding upstream 292081 24200665 ~ 24228356 (+)
XLOC_030061 NA non-coding upstream 509538 24008862 ~ 24010899 (+)
XLOC_030083 NA non-coding downstream 715812 25248198 ~ 25249676 (+)
XLOC_030085 NA non-coding downstream 778877 25311263 ~ 25314752 (+)
XLOC_030090 NA non-coding downstream 1168639 25701025 ~ 25710432 (+)

Expression


Co-expression Network