XLOC_030077 (atp6v0a2b)


Basic Information

Item Value
gene id XLOC_030077
gene name atp6v0a2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 24543862 ~ 24567869 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058820
CAGTCAGAAGCAAGCACAAATGACTAACAACTGCAGGTAAACATTACAGAATTGTCTGTAAAATGATAACGAGGAGATAAACACACCGTGAGCAAATAATTAATTGAGAGGACAAGCACCTTCGGCTGTAGCTCTCTTGCTCGCTGCTATTCGGACCGAAGACAGCACGGAAAGTGGCTTTTATACACAGTCGGTGCGGTAGGACTTAAACCGAACTTTAGTGATGGAGGACCCAACAGTACCGGAAACTGGGATTTAATTTGAATAAAGACTATCAGCTTGATTACAGCGGTCGTGTGAGGCTGTCTGGACTGAAGACGGGAGACGTGTCACTGATAAAGCGGCTGAAGTTAAAGCCCCAGCGCGGACATCCAGTCATCACTCCGGTCCGCCCCAGTGCAAGAGTCAATCCATCACATAACCTTCACCTGtaggatatttatttacttttggcTTAATAACACTCCCTAACACTTCACTTGTGTGGAGAGGAGCCGTTTGATCACCATGGGTTCGTTGTTTCGGAGTGAGGAGATGTGTCTGGCCCAGCTCTTCCTGCAGTCCGGCTCCGCGTATGACTGCATCAGTGAACTCGGAGAGCTCGGCCTGGTGGAGTTCAGAGATCTCAATCCCAGTGTGAACTCTTTTCAGCGCAAGTTTGTCAATGAAATCAAGAGATGTGAAGAGATGGAGAGAATTCTGGGATATCTTCTGAGGGAAATTAAAAAAGAAGACATCCCACTGCCAGAAGGGGAGGTGAACCCTGCTGCACCATTACCCAAACATGTGATGGTCATAATGGAGCAGCTTCAGAGACTGGAACTCGAACTGGGTGAAGTCACCAGGAATAAGGAGAAGCTCCAGAAAAACCTTCTAGAGCTGactgaatacacacacatgctCCGCATCACTCGCAACTTTGTGCATCGCGGCACAGAGAGAGAGTCAACACAGGGCCAGTATGAAGAATTCCCCTTTCTAGAGAAAGAACCCATGATGGACTACACCAGCATGCAGAGGCTTGGAGCCAAGCTTGGGTTCATTTCTGGCCTCATCCAGAGTGTGAAAATCGAGGCATTTGAGCGAATGCTCTGGAGAGTATGTAAGGGCTACACTATCCTCAGCTACTCTGAGGTAGATGAGCTTCTGGATGACCCTGATTCGGGTGAGCCGACTAGGAGTGTGGTGTTCCTCATCTCTTACTGGGGAGAACAGATTGGACAGAAAGTGAAAAAGATATGTGATTGCTACCACTGTCACCTGTACCCATACCCCAACAGTAATGAGGAGAGGACCGATGTGGTGGAGGGCCTCCGAACACGCATTCAGGACTTGCACACAGTTCTACACCGTACTGAGGATTACCTGAGGCAAGTGTTGATCAAGGCCTCAGAGTCTGTGTACATTTGGGTGATCCAGGTGAAGAAAATGAAAGCTATATACCACATCCTCAACCTCTGCAGCTTTGACGTCACAAACAAGTGCCTTATAGCTGAGGTGTGGTGTCCTGTCAATGATCTGCCCGCGCTTCGGAGAGCACTAGAAGATGGATCGAGAAAAAGTGGAGCCACAGTTCCCTCATTTGTCAATCGTATCCCAAGCAGTGACACTCCACCGACCCTCATACGCACCAACAAGTTTACCTCAGGCTTTCAGAATATAGTAGATGCCTATGGTGTGAGCAGCTATAGAGAGGTCAACCCAGCTCCATATACAATCATCACCTTTCCCTTCCTGTTTGCGGTGATGTTTGGAGACCTTGGTCATGGCATTATCATGGCTCTGTTTGCTCTGTGGATGGTTCTCTATGAGAACGACCGCAAATTGAAGAAAACCAGGAATGAGatCTGGAACATTTTTTTCGAAGGCCGCTACATCATCCTGCTGATGGGAGTATTTTCAGTCTACACTGGATTAATATACAATGACTGCTTCTCCAAATCACTCAATATATTCGGCTCGGGCTGGAATGTCAGTGCCATGTTTGAGAATGGAGACTGGACGTTGTCCACAGTAAACTCAAATAAGTTACTTGCACTGGATCCAAACATCACAGGAGTTTTTAAAGGGCCTTATCCACTGGGCATTGACCCGATCTGGAACCTGGCATCAAACCGTCTCACCTTCCTAAACTCCTATAAGATGAAGATGTCTGTGATTGTAGGAATAATCCACATGACGTTTGGAGTCGTCCTTGGCATTTTCAATCACTTgcACTTCAGACGGACAATCAATGTGTACCTGATTTTTCTTCCCGAGCTGCTCTTTCTGCTGTGTCTCTTCGGTTATCTGGTGTTCATGATCATCTATAAGTGGCTCTTCTTCACAGTCAGAGATTCTCAGACAGCTCCCAGCATCCTCATCCACTTTATCAACATGTTCCTGATGATGGGCGACTCTGGCCGACCACTCTATCCAGGACAGGCTGGATTTCAAGTGTTCTTGGTGATCGTTGCTGTGTTTTCTGTGCCTGTGTTATTATTTGGTAAACCCCTCTACATCTACTGGCAACACAAGGGCAGAGACCGCCTGAGCATGTACAGGGGTTACCAGCGTGTGCGCAGGAGCAGTGAGGAGGAGCTTTCTCTCTTGCACACTCATGACTTGGAGGAGGGCAGCAGTCTGGACAGCCACTCTTCCAGctctgacagccaatcagaagagCCTGATTTTCCGGATCTGTTTCTTAATCAGTCCATTCACACGATTGAGTATTGCCTTGGCTGCATCTCTAATACTGCGTCTTACCTCCGCCtgtgggctctcagcctggcacATGCCCAGTTGTCTGAAGTGTTGTGGGAGATGGTGATGCGGGTGGCTCTGCATGTGGACACCAGTGTGGGCATTGTGTTGCTGGTGCCTGTTTTTGGCCTGTTTGCGGTCCTCACGGTGTCCATCCTGCTGGTGATGGAGGGACTTTCAGCTTTTCTTCACGCTCTCAGACTCCACTGGGTGGAGTTTCAGAATAAGTTCTACAGCGGCGTCGGAGTCAAGTTCATACCGTTTGCCTTCTCTCTCATGCACAGCAGTTTTGAAAAAGATGGGCTGTTGTGAACGGTCAGATGCTGAAGGTCAGATGTGGAATTTTGATGTATAACATGCCAAATTGGTCCAACCAAATACTTTTGTGGGATGGATTGTATGAAGATCTCGCATCACACAAAGACTGTAAACGGGACTCTTGAGTGCTTCAGATCTGTTGAATGTATTCTGTCAGCTCTTCACTAAAGTGATGCTGGGAAATTTCAGTTTTCCACCTTGTTGCCTGTTGGCTATGATTCTCCATAGCTGAGCACATTCCACAAGTGACTTCAAGATTTCACTTGTACATTTGCTGTAAAGCAAGTGAAggtttaatagtttattttgaaTAGTCCAGATTTTTCATCCTGTTGTTTTCACTTCCGTGGTGTTGGTTGATTGTGTTCGTTCATAACGCTGAATGACATTTGGGCAGGTCTTCTGTTTTTGTTAGAAAATGCAGCAATGTCTAGCCCAAAAGTGCTCATTCTTAGCGCTGATCTGGGCTGTAGAGGATGGAGCTTCATGTTTGATTGAGTTCTGAGCTGATCACAGGATGATCAGGTATTTTTAAGTGCCTAACATGCTGAATGTATTCTAAGGGCTGGTGGATTGGATTCTTCTGTGGATAAAGTCATTTGAATTGAGTTGTTTTAATGGTGAAATACATGGCGTCTTTTGCATCGTCTTAAAGGCAGGTGTGAAACTTTAAAACCCTTttcattttatggtaaatgttttAGTGATTAACCGTCACAGATTTGGTCTCTTTTGCCTCTTCTGAATTGATTTTTAACTCTTGACTTTAATGTGAGACGTTTGGGTGTGAGGATTCATTGTGAGCCACTGAAGTCATTCCAGTTTCAGGATTCATTttccctcttttttaaattttatttattaacagcGCTCGTTATTTTGATTTTGTTCTGTTGTTTGAGGAGTCTGTGCTTTAGGTGACTTACATTCCAAAGTTTGCATATGAGCTCTTTGTTTAACATTACACAATAAAAA
>TCONS_00058821
GTACATTTGGGTGATCCAGGTGAAGAAAATGAAAGCTATATACCACATCCTCAACCTCTGCAGCTTTGACGTCACAAACAAGTGCCTTATAGCTGAGGTGTGGTGTCCTGTCAATGATCTGCCCGCGCTTCGGAGAGCACTAGAAGATGGATCGAGAAAAAGTGGAGCCACAGTTCCCTCATTTGTCAATCGTATCCCAAGCAGTGACACTCCACCGACCCTCATACGCACCAACAAGTTTACCTCAGGCTTTCAGAATATAGTAGATGCCTATGGTGTGAGCAGCTATAGAGAGGTCAACCCAGCTCCATATACAATCATCACCTTTCCCTTCCTGTTTGCGGTGATGTTTGGAGACCTTGGTCATGGCATTATCATGGCTCTGTTTGCTCTGTGGATGGTTCTCTATGAGAACGACCGCAAATTGAAGAAAACCAGGAATGAGatCTGGAACATTTTTTTCGAAGGCCGCTACATCATCCTGCTGATGGGAGTATTTTCAGTCTACACTGGATTAATATACAATGACTGCTTCTCCAAATCACTCAATATATTCGGCTCGGGCTGGAATGTCAGTGCCATGTTTGAGAATGGAGACTGGACGTGAGTGTGCAACAGATAATATATAATATGctgaatttcattcatttttaaaattgtaaagagaCAACCTTCCGTGTGTCTGTGGTTATTGATGAatttaaggtttaaaaaaaatagcacatTTCACAATTTAATCTTAACAGTGTGCTGTTATTTTTATCTTTCTTCAAGGTTGTCCACAGTAAACTCAAATAAGTTACTTGCACTGGATCCAAACATCACAGGAGTTTTTAAAGGGCCTTATCCACTGGGCATTGACCCGATCTGGAACCTGGCATCAAACCGTCTCA
>TCONS_00058822
TCAGACAGCTCCCAGCATCCTCATCCACTTTATCAACATGTTCCTGATGATGGGCGACTCTGGCCGACCACTCTATCCAGGACAGGCTGGATTTCAAGTGTTCTTGGTGATCGTTGCTGTGTTTTCTGTGCCTGTGTTATTATTTGGTAAACCCCTCTACATCTACTGGCAACACAAGGGCAGAGACCGCCTGAGCATGTACAGGGGTTACCAGCGTGTGCGCAGGAGCAGTGAGGAGGAGCTTTCTCTCTTGCACACTCATGACTTGGAGGAGGGCAGCAGTCTGGACAGCCACTCTTCCAGctctgacagccaatcagaagaggTCAGACACTCTCAGCCAGCTGTTAATAAACTGCATTCTCTATGAGCCTAACAAAGTTTCCTCTTCTCCTGCAGCCTGATTTTCCGGATCTGTTTCTTAATCAGTCCATTCACACGATTGAGTATTGCCTTGGCTGCATCTCTAATACTGCGTCTTACCTCCGCCtgtgggctctcagcctggcacATGCCC

Function

symbol description
atp6v0a2b Predicted to enable ATPase binding activity. Predicted to be involved in vacuolar acidification. Predicted to act upstream of or within proton transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of vacuolar proton-transporting V-type ATPase complex. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in autosomal recessive cutis laxa type IIA and wrinkly skin syndrome. Orthologous to human ATP6V0A2 (ATPase H+ transporting V0 subunit a2).

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:0007035 vacuolar acidification biological_process
GO:0006811 ion transport biological_process
GO:0016471 vacuolar proton-transporting V-type ATPase complex cellular_component
GO:0033179 proton-transporting V-type ATPase, V0 domain cellular_component
GO:0005886 plasma membrane cellular_component
GO:0000220 vacuolar proton-transporting V-type ATPase, V0 domain cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046961 proton-transporting ATPase activity, rotational mechanism molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0051117 ATPase binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060526-4 Predicted to enable ATPase binding activity. Predicted to be involved in vacuolar acidification. Predicted to act upstream of or within proton transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of vacuolar proton-transporting V-type ATPase complex. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in autosomal recessive cutis laxa type IIA and wrinkly skin syndrome. Orthologous to human ATP6V0A2 (ATPase H+ transporting V0 subunit a2).

Ensembl:

ensembl_id ENSDARG00000035565

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058820 False 4038 mRNA 0.46 20 24543862 24567869
TCONS_00058821 False 893 lncRNA 0.42 5 24552423 24556825
TCONS_00058822 True 517 lncRNA 0.51 3 24557130 24561175

Neighbor

gene id symbol gene type direction distance location
XLOC_030076 dgcr8 coding upstream 11476 24520437 ~ 24532386 (+)
XLOC_030075 NA coding upstream 71786 24469471 ~ 24472076 (+)
XLOC_030074 NA coding upstream 93342 24340677 ~ 24450520 (+)
XLOC_030073 ctsll coding upstream 234195 24305877 ~ 24309667 (+)
XLOC_030072 zdhhc23a coding upstream 249702 24282570 ~ 24294160 (+)
XLOC_030078 NA coding downstream 248456 24816325 ~ 24835317 (+)
XLOC_030079 NA coding downstream 305936 24873805 ~ 24879565 (+)
XLOC_030080 rhbdd3 coding downstream 314764 24882633 ~ 24886597 (+)
XLOC_030081 mrpl41 coding downstream 505025 25072894 ~ 25075179 (+)
XLOC_030082 paxx coding downstream 516516 25084385 ~ 25087292 (+)
XLOC_030071 NA non-coding upstream 265536 24261550 ~ 24278326 (+)
XLOC_030069 NA non-coding upstream 315506 24200665 ~ 24228356 (+)
XLOC_030061 NA non-coding upstream 532963 24008862 ~ 24010899 (+)
XLOC_030083 NA non-coding downstream 680329 25248198 ~ 25249676 (+)
XLOC_030085 NA non-coding downstream 743394 25311263 ~ 25314752 (+)
XLOC_030090 NA non-coding downstream 1133156 25701025 ~ 25710432 (+)

Expression


Co-expression Network