XLOC_030078


Basic Information

Item Value
gene id XLOC_030078
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 24816325 ~ 24835317 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061699
tttaattacaagAATTAAATTAACAGCAATTGGTTTTCAAAGAACAGTGGAATGTTGGTCTTGCAATATTGCTATTCAACACAGACAAATTCCACAATGTCAAGACCTTACATTTCAttgtcaacattaaaaaaaaaaacaatcagccaaaaaaaataaaaaaatagacgtGAAAAGTAAAACCACCAACATTCAGATTTAAAACCATCCAACAACCTTTTCATGAAACCAGAGCATGACTATAGATTCAACATGCATTTTGTAGATCACATCTGAACATCATATTCTCCTAACGCAGATGGGTTTGCTCAAGTAAATAAAACGTGAATCTACACAATCCTGACACCAATAATGATAAAGAAACAGAGAACCCATCCatgcaataaattatttaaacagtcCAAATCATCTTTCAGTAATTGTTCATTGTCTTGTAAAAGCAAAGCAGAATGGTTACAAATGGATCTCAAAATGGGTTTACTGTACAAGTGTATGGCAGTTAAAGATTAAATAGTCTGTAGTGTTTATGTGTTCTAAAGTAAGATTTAGGCACAGCAGCTATCAATATAAGTTGGCAGAAAGCTCGACTGTCCTTATATATAATCCTCGGGATGAAATTTAACATCCTAAAGTGTCACATCAGATGTTTAAATGGcaacaaatgtaaaaacaatgtGTAGTGATGAATTCTATTGCGTTATTTCATACAGGAGGTGTTGTGGAATTTTGACAGCCATGCTAACAGTAATGATTGCAGTCAGTTAGgcgaaaaataaaacaataataataataatactgtaatgAATTCCCATTCACTATTCTGACCCCTTTTTGATTCAATGGAACAGCAAACATCAGAAAATCTTTCAAAACAACACTTGAGCTCATTAATACACGCCGATAGAAATCCTCCACAAGAAAACATACCAGAAGtaaacagttcattcattcattcagaaacataCGTCATCCCTTTATTAGAAAACAATTCAATCACCAAGGCCTAATAACTTActtgatataaataaacaatccACTGCCAAAGCACTGTGTGTGTAGTGTAATTTATAAAAGTAGTCGATGTTTTTCCCCTATAATATGCAATGCTCTGTCAGAACAAATGTGtttgaaataaacacacacacacacacagataatttATGATAACTCACGTTCATACTGTCGATTCAGGTCAATCAAACTTTGCTAGTGACGATATTTTTGTCAAGCTGTTTAACCGCTCAACCACTTGGTGGCGACATAGACTTTAAAAGAAATTGGTCTGATACCACGACAACTACTTTATAAACAGCTTTGGATTCATTTGATTTCCTTAACAATTTCCATTTTCTATCCATAAGTTTTGATTTCCATTTTTGGAAAAACCTATTGATGGACAATATGGCACTATCTTTCGTTTAACATCCTTCATCATTTCTCACTTGTAGATAAATCAAGTAATATCTTCAAATTTAACcagctgctgaaaaaaaacaacaaacaggaTCAGGTGTTACTCCTTTAAATCGCGATTGTCTCACAGTTTACAACGGGTCAAAACAGAAGATCCATTCAGTTGAACACATTCCCTCACACGCTAACAGATTTGACCATACTTTACACTTCTCATTCTTACTTTAAGGCAAGAAAATTTGTCAAGGCAACATTCAATAGCAACATTGCATAGCTAAGGCAGAATTACCATACTGAAATAAAcagcatacttttttttttttttacattagttcaattaattaaattccattaatgaatttaaatttactaccACACATTAAAGCAACTGaacatatattacatataataaatGTACACATTAATCAATTATTTTGTACAGAACATGttacacaaatacaattttttcTTGTTTGCCGATGTTGAAGTTAAGCAGACAATGTATGAATTATAATATCTTGAGAATTGTAACAAGTTGATATGCAATCCTATTTAGCCTTGGCTAAAGATTTaggtattttacagtatttccaatacAGATTTCACATGGCTGAAATatcatttaagtgtttttttacaCCAAAATTATTCAGCCATGATTATTTTTTTGCCCTGTGGATTTTATAGCTCTTTCTTTTtactatacactctcagaaataaaggtacaggagctgtcctTGGAGCTGTACCTTTCAaggggtacaaatttgtacctgaagagttcatattggtacctcatAGGTACGTTTTATGTACACTTGGGTACTAATATGCccctttgaggtaccaatgtgGATTCTTTAGCTACAAATAtctatcttttgaaaaggtactgcctcaGTGACAGCTCCTTTACCTTTATGTCTGACAGTATACAGTATATTCTGTATATTACAATTCCCTGATGGAAATACAATTTGTTACGATCCTAAATGGAAAAATAGCTAAAATTTGTTCTCATGGAACAGCTCATGAGAAAATCAAAATGAAGCATTAAACACATATATCCCTAAATGGGAATTGCAGTGATTTCCATTGTCAAACTAAAAACTCAAAGAAGGAACAATGACCCAATGAACAAATCTGAACATAGCAGATCATAGATCTCAAACacaattcctggagggtcacagctctacacagtttcagttcaaccctatttaaacacagctgatccaaacaaTCGAGTGTTTAAACGAGGCTTGAACACCTTGATCagatggatcagctgtgtttgattagggttggagcaaaactgagcAGAGCTGTGGTttgagtttattattattattattttttttgagtttgagacctatggctCAGATGGTGCATGGAGCATTTTGATTTACTTAAATACAGGCTATGTTGGTCCAAGATGTCAAAAATGGCATTGGTAATGTTCTTAGCCACTTCAGGGCAAATGTCTCCAGTGAAATGACAGTGATGGTTCCAGCATCCTGctacatgttttacacaacaatcAGATGTGCATTCAAGTCTCCTAGTCTCACGAATGTGCTTTTTTGCCGCTCCTCTTTTTATTCTGACTGTAAATCAGCTGAGTGAGGGAACACAGAACGCTTCACGACATCCAGGCCTCATTATCCAGGCTGGACTCTGAAGAATAAGCACACTCCCTAGAACCCATAGCTGTAGACCGCTGTTGGGGTTGGATGAGGTCAGCGATAGCCTGATGCAGGGCTTTGTGTGAGGGTTGGTGATTGTTTATTCGTGGGGACTGTGGGGGCGTCTGGAGGGGAGACGAGTTGGCAGGAGACTGATGACAATGATTTGCATACCGTACAGGCGTAGGGATGCGTGATGGGCTGTTATCGGGTCTGTTGTCAGTGCGAGGTCGTATCCGTGGACGCAGCTTGAGCTTGTAGATGGACGGGACTCTCTCTGCCTTCTTTTGACTTTTCTTGGCACGGAGGACAACTGTGCCATCCGCATCCCCATTGGCCAGTGGCCGAGGAGGAGTGCAGGAGCCCTCAGATGGAGGCTCACTCAGACTTAAGCACATGGAGGAGCTTTCACTGGAAGAGTCCTGATAGGAACAGTCATCAACAGGGGGTGGAGGGGAGGGAAATGATTCAGGTAGAGGCTGGTCAGCATTGTCATATGGCAGGTCCGGGTGATGTTCACATTGTGGCACGTCTGCCTCCAACCCAGGCCATTCCACCAGTTCCTCTTGGCTCTCCATTGGTACCTCAGTCAAAGGAAGGCTGCCATTGATGTCTTTGGGGTGGCACACTGACCTTGATAAGCCTGGATTTGAGGTCTCCCCTTCCTCTATGGAGCTGGAGATGGCTGGGAGCTTACGGAGACCGCTTCTGCCACCCCATCGCTCTCCTTCCATCATCCCCCCGTTAGTGAGGCCTCCACGAATCTGGCTATGCAGAAGGGCAGGAGGGTCTTCGAGTGCACAGGTACGAGAATTAGTCCGTTTAGACTCTCGCAAATCAGGCAGGACTCCCACTTTACCTCCAACATTAAGAGAAGACGTTGAAGAGTTAGAAGAAGAGTAAGCAGAGTCTGTAACGTTAGTGTCACCAGAAGAGTTTGGGAGTACCCCTAAAGCTTGTTGAGAGCCAGGGAGCTGTAGTGACCTCATCTCCCTTCCAGCAGATGCTTTACCGTGCCCAGCCTTAGCTTGTTGCGTATTGGCAAGAAACTCTGCCTCAAAGCTGCGATACAGGTCTTGCTCCCTTTGAGGGTCAAGACTTGGCAACAGGTGTAAACTAAATATGCTGCTGTCCTCCTGGCTCTCCTGCTGTTGGTTGTGCGGATTTGCCCAAACTCTTTGGTCTCTTCCTATAGATCTTGAATTATGAGCAGATCGAGGGGAGCGTGGTGGATGATGACTTGAACGGGGAGAAGAATGTGGGGATCGCCGTCCTGGTTGTGTGACAGGGGGAAGTAACTTCCGGCTTCCAGAGGATGGTGACCGAGGAGCAGGAGGCCTTGGCATGACCATTCCTTTTTTCGCAGGACTTCCACTAGTGCAGCCCTTCGCAGGTGAGTTTGAGCCTGAGGAATTTGCTTGTCTTCTAGGCATACTTCCACTTAATTTTGGGGAAGCTGTCGGCACGTGCTTGGGTCTTAGTTCCTCTCTTCGATCTATGGAAAGAGGATGAGGGTCTTTGCGGCGGGGAGATGATCCAGGACTGACATCACCCAGTCTACCTCTAGGTGTCTTACCCTGGCTAAGGGAGCGTGGCGTCTGCAGTTTTCGTGGACCATCAGGCCCCAAAGATCTGCCTCTTTCTGTATGGGGTGTTCGATGTACCTCTGCTAGGCCCTGAGGTGGACTAGGTTTCAGGATTGTACTGGCCTGCTGTGCAGGGCGCTCTCTGGAAGCACTGCGTGCACGGGTCTGAGGGGTTCTCAGGGCTGGAATCTGTGCTGCCCCTCCAGGACGTTCAATAACATGTTTTCCCTCTTTTCGGTTCACCAGCAGAACCACCTCATCTGCATGTGCATGCCGTGTACCCAGAGAGAAGCGGCCTCCTCCTGTGCTTCCTCCTTTAGAAGAAGCAGTAGAAGAGTCACTGTCTCCTGAAAGCCTGCGGGCTGGAAGAAGAGATTCCTTATACCCTGATGAAGATGAGAGCGCTGGAGTCGCCCACTTTATACTTTCCTTCTGAGACTTTGGTCATGGGGAACTGTGACGGACAGGAGCACTGGCCCAGAATCTCCCGAAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00061699 True 5177 lncRNA 0.42 2 24816325 24835317

Neighbor

gene id symbol gene type direction distance location
XLOC_030077 atp6v0a2b coding upstream 248456 24543862 ~ 24567869 (+)
XLOC_030076 dgcr8 coding upstream 283939 24520437 ~ 24532386 (+)
XLOC_030075 NA coding upstream 344249 24469471 ~ 24472076 (+)
XLOC_030074 NA coding upstream 365805 24340677 ~ 24450520 (+)
XLOC_030073 ctsll coding upstream 506658 24305877 ~ 24309667 (+)
XLOC_030079 NA coding downstream 38488 24873805 ~ 24879565 (+)
XLOC_030080 rhbdd3 coding downstream 47316 24882633 ~ 24886597 (+)
XLOC_030081 mrpl41 coding downstream 237577 25072894 ~ 25075179 (+)
XLOC_030082 paxx coding downstream 249068 25084385 ~ 25087292 (+)
XLOC_030083 NA coding downstream 412881 25248198 ~ 25249676 (+)
XLOC_030071 NA non-coding upstream 537999 24261550 ~ 24278326 (+)
XLOC_030069 NA non-coding upstream 587969 24200665 ~ 24228356 (+)
XLOC_030061 NA non-coding upstream 805426 24008862 ~ 24010899 (+)
XLOC_030085 NA non-coding downstream 475946 25311263 ~ 25314752 (+)
XLOC_030090 NA non-coding downstream 865708 25701025 ~ 25710432 (+)
XLOC_030094 dre-mir-204-1 non-coding downstream 1136751 25972068 ~ 25972160 (+)

Expression


Co-expression Network