XLOC_030079


Basic Information

Item Value
gene id XLOC_030079
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 24873805 ~ 24879565 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061700
AAAGGACTTTTAAAATTTTTTCCTCTATGTAAATTTCCTTTTGCTTGATGCGTGAACTTAGTAGGGTCTTTCCCTGCGCTCCTGACGATGATCCCTGTTGAGAGAGCAAAAGAAACGATCTCTATATGCACCCCAAGCACTAAAGCACTTtgcattttgttaacatttgcaACATGTGATGCTCACCTCATTTCCATCTTGCCTGGGGGTCCCATGCCTCTTCTGCCTCTGTCCATGGGAGGACCACCCCTGCTACCTCCTCTGAATCCGCCCCTATCCATCCCACCACGGCCTCTGAAGCCTCCGCGATCTCCTCCCCAGCCTCCACGCATTCCTCCCGGCCCACCACGGTCCCTGGAGAAAAGGGAGGAGAAGTTCCAAGGCCTTCGGGTTTTGGAGCTTTACACTGGTTACACTCCATTCTCCAGGAGAAGTTCTGATTTCCACaaccactaaaaaaaaaaaaaaaaattaatttagatttatgCATATTTACCAGCCAAAACAATTCATCTAGTACGATGGATCTCTCACGCGTTAGGACATTCCCAGTCTCCAGCTCTTTTCTGCACATTTCCTGGTTGAGGGCCGCCGTTCCAGCCCATTCCACCTCGAGGGCCACCACGCGGGGGAAAGCCGCCTCTCTCGCCTCCTCTGCCCATCATTCCTGCATTGCACAAAGTCATTAATAAACAAACACCTTCTGGTTGAACGTCACTTGATGCCTTGGGGGTTTATCATACCTCCACGATCCATTCCAGGGCCACCTCGCATTGGCATTCCTCCTCTCATTCCCCCAATCATGGGCTTCCGGCGGGCCATAGAGACCTTTAATCTCCTGCCCTGAAACTCCTTTCCTTTTTTTTGAAATGTAAAGTACAGATGATAAATTCAAGTAGCAGAATAAAAAATCCAAAGTTATGGCAATATAATAAAAGCAgcaaacaaaccatcaaaatgtTCAACTGCAGCTTTGGCAAATGCAGGTTCCTCATAGGACAGTGTGGCATCCCCCTTTGGCTTGCCGCTGTCTTTATCTGTATAGATGTTGATGGCTGGTTGATTTAAACGCCGATTTATCTGCAAGAGAGATACCAAAGTCATCATTAAAACAGTCCAACCAGTTATTTAGAATTAACCACCTAGATTCATATTTTCTCACCCGAATTGCTCCAGTGTGCTTGAAAAACTCAGCCATCTCTGGTAGAGTGGCATTCTCAGTGAGACCTGTGATATAGATGGTGCTGTTCTCAGAGTCCTGCTCTCCTGGATGGCCTGTGTGTTTAAGAAAAAGATTTAGCTACAATTCTACATTTGCTGTAAATCAGGGTAACTGAAATGCTGCAGAATATTAGAGAACATCCTTATTGAAAATGATCCATATTGAAATTGGCTTTTTAATTTCTCAACATTACTGTATAGAACAGCATTTGAATTATCACAATAAGGCTTTCCCATCTCTTTATTAGTTCAATGAATTTTAATAGTCTAAACAGTGTGCATGAAAACAAGTGAAAACGTACCCATATCACGATCCATTCCACCCCTCATAGGTCCTGGGTTTCAGcaaaaatcaaagaaaaacaagaaatcCTATTAGTAAATGATATCATGACTtacaaaaaaaaacctgacaacctgccaataaaaaaaactgagcagaattaaatgcattgaaaaaatgtgacCATTTTCAGGATTACCCTGGACCACAATTGATTCTCAGAATAAAATGGAAATGTCAAATGTAGAATTAAAAAAGACGCTTTGTCAAAGGACACGTCAACTTTTGAAGAAATCCAAATATATACACACCAAATATAAACCACCAGAACACactgttgtagttttttttttttaaagtggcaaAAGTGGCACACCAAATGAAAGGTTTTAAGGACACATAGGCGTGAATAGCCTCTATATCAAAAGTCGAGTGGACTAACCAATGGATAACGCTTTAGAAACTTACCACCAGGCTTATTGAAGCCCCCTCTGTCTCCAGCGATGCTAAACATGAAGATATGAAGGCGATATTCCATTTAGTCTCCAACCATAGGACTTGAgtaaaaaatgaacacaaaatcCCCCCTCTAACTATGCAAAGGTCTcatgtaatatttcacaatattttgtTAATTACTGGAACAGCTTTATGATTTCTATACATTCTTCAGTTGCAAAATTTAACATATAAACAACCACACAGGACCAGAAAGACATTGACTTGCTGTAAACCTTTTGTAAAGTGGGAAAAATTATGAAGTTAGCTTGATGCCTTATTCTTTTGGGTTACAACCACACAGAAAATACAGCAATCTTGtggcaaaaaaaatctttagcaATCTGAACCCAAATTAACCCAGTAAAAAAAGTCAGCATTGAACAAAACAGTACATTCAAAAATACTGAGCACAAATGAACGTTTACAAAGGGTGAtccaaggagaaaaaaaatacatttcacaaataTGCTGACTAAAACAAAATGTTCCAAAACAGTAGGtaaattcaacaacaaaaaaaatccctAAATCAAAAACGTTCCCCATGGTTCGAGTTGTTGCCTTTGAAAAAAGGTACTTAAGAATAAGTACTGCTGTTCTTACATCGATCTTTGATACCTGCAGCGTATAAATGTGACAATGTTAAAAACAAGACCTTTGAAATAAGAAACAGTTCAcaagtgcaaaaatatttaagaacatGAAAATGTatcaattttaatataaaaattgtgtaaaatgGCATGCTCACCGTCCCCTGAAACAAATTCAATAGGAACACAATTTTGGTGAACACATCTTATTTCGTTTACAAACAATGATTAGTTTTATGGGTTAATAAAAAGCACCTACTGGGAAGCACTTAAAAAGTtgctttcacaaaataaaattctTACCTCGTTAAAGAAAGTACATCACTGTGTCCGTTAAATATCCAAGGATTGTCTTCAAGGTTACTCCAACCAtttctttaaatgtcttttaaactGAACCAACTGTACAACTTGCACTGACCCTCTTAAAACCTGATCATGATCCGCATACTCTTAATACAACAATTTCCTTTTAAATATAAAACCCAGCAAGGATAAAACTTCAAAACCCAGAATTGTGCCACCATCTGCCAAAGAAAAAATTTCAGGGAAAACTACCAAATTCTCAAATGTCTTAATGTGTTTGCCAAGTTTTCCTTTACCCACAAAGACCTAACAGCAGTACTGTACAGAGCCTTAAACAGCCAAACCAAAGGGTTCTTTTAGTAGACATCTTGAATTACAGAAAAACCACACCTCCAAACAAAACCTTAAATATGAATTAtagaaagaaacttaaaaaaaaaaaaaaaaaaaagattacacaaaatgcaaaaactgtaaacttgagagaaaaaaaacctatCCCGAAATATGCGTTTAataagggtgcccaaactctgtcctggagggctgttgtcctgcatagtttagctccaacctcaaCACTCCTACCTGGATTTTTCAAGTATATCCaaaaagagcttaattagctggctCAGgtctgtttaattagggttggaactaaactctgcatcACCAGGTTTCGGCATCCCTGTACTAAAATTAccccataaataaaaataactacaatAAATGAACCCAAAGTAAACTCTGCAACAACACCCTTGTGGTCATAAAAACCTCTACAAATCAAATAATGTTTGGACGAGCTAGAGAAGAAACTTCACTCTTTAGACGCCTGCACATACAAACCCTGGAGGTGGTGATGATACACTCAGTAAAATGAGCGAGAGGGAAAACAAATGAACTGTTAGTTAGACTAAGAATGTTTGAACTTACCCCATGCCACCGCGGCCCATACCACGGCCTCGAGGACCTCCACGGTCATATCCATCTCGGCCACCATCCTGGTATCCACCACGCTGTGACCCTGGGTAACCTCCGCTCACGCCACCCTGGCTGTAACTGTCTACAGGAAAGATTGCACACTAAGCACCGGGCTCAGTACTTGATGAATAACTGGAAACACTACCAGTGGAATATGGACTTACTATAAGGATTTTGCTGGTAATCATTCTGTGGCGCACTCTGTTGGCCATACTGAGTCTGTGCATAGGAACTGCTCCCCTGAGGAGGGTAGGCAGCAGGCGGGCCTTGCTGGTGCTGTTGAGGTGGTTGTCCCTGTCCATAAGCACTCTGCTGTTGTTGTCCATAGCCCGGTTGCTGAGCCTGGTATCCTGGCTGAGAATAGCCTGCAGGCTGCGAATAGGCACTTTGGTTGTAGGCCGGCTGGGTGGAGTATCCGGGCTGAGAGCCATAGGAAGCCTGAGCAGCAGGGGCAGCAGTGGAGCCGGTGTAGCTGCTGGCCCCGTAACTCTGTGCAGGCTGAGTATAGGCTCCTGGCTGTGGAGTTCCATATGCAGCTGAGGAGAACAGTTACCTAAAATTAGCTAAAGTAATCATTTTCTGTATGCACCTGAATAAACAGCACTACCACACAAGCAGGAGAGCAAAATAAGGAAAGCAAAAGTGAACGAGTCTAACTTGAAGAGGTGAGGACTACATGTTTTACATAGGGTGTTCACCAGCACTGTAGTGCCAAAAAAGGTTTAAATTCTGCTGTTTTGTGTATAAgccattagggctgcatgattaatcggAAAAAGATTACGATCTCAATTCGACCCCGCACAATCTTAATTCTGCTTTTTCTACGAtacagccaattatatttttaaggtcaGGAGCGAAGCaaggcagtcgcacaagtcttcacaacAACATCAACGCCTTCAAAAGGCGttgaaagtgtcacatactgtatttattattaaggtATAACTCACCCAAAAACGTAATTTCGGTctaaatgtaatgatgtattcgcagcCGCGAAATCACACGCGAGGTGACCCCCAGCTGTTTGCTTACTTTTGAGAACATGCACGCCAATGGCGCATACTTTagagaacagaacctgcataggctgcgAGCAACAGgtaattaagttgtaaat

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0016071 mRNA metabolic process biological_process
GO:0008152 metabolic process biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0000380 alternative mRNA splicing, via spliceosome biological_process
GO:0000381 regulation of alternative mRNA splicing, via spliceosome biological_process
GO:0006396 RNA processing biological_process
GO:0006397 mRNA processing biological_process
GO:0006403 RNA localization biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0050657 nucleic acid transport biological_process
GO:0050658 RNA transport biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051236 establishment of RNA localization biological_process
GO:0050684 regulation of mRNA processing biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0015931 nucleobase-containing compound transport biological_process
GO:0051028 mRNA transport biological_process
GO:0048024 regulation of mRNA splicing, via spliceosome biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:1903311 regulation of mRNA metabolic process biological_process
GO:0043484 regulation of RNA splicing biological_process
GO:0045292 mRNA cis splicing, via spliceosome biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0008380 RNA splicing biological_process
GO:0071010 prespliceosome cellular_component
GO:0071012 catalytic step 1 spliceosome cellular_component
GO:0071013 catalytic step 2 spliceosome cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044451 obsolete nucleoplasm part cellular_component
GO:0030532 small nuclear ribonucleoprotein complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0120114 Sm-like protein family complex cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0016604 nuclear body cellular_component
GO:0016607 nuclear speck cellular_component
GO:1902494 catalytic complex cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005684 U2-type spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component
GO:0005686 U2 snRNP cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0097525 spliceosomal snRNP complex cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0071004 U2-type prespliceosome cellular_component
GO:0071006 U2-type catalytic step 1 spliceosome cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function
GO:0036002 pre-mRNA binding molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko04623 Cytosolic DNA-sensing pathway
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00061700 True 5017 lncRNA 0.41 4 24873805 24879565

Neighbor

gene id symbol gene type direction distance location
XLOC_030078 NA coding upstream 38488 24816325 ~ 24835317 (+)
XLOC_030077 atp6v0a2b coding upstream 305936 24543862 ~ 24567869 (+)
XLOC_030076 dgcr8 coding upstream 341419 24520437 ~ 24532386 (+)
XLOC_030075 NA coding upstream 401729 24469471 ~ 24472076 (+)
XLOC_030074 NA coding upstream 423285 24340677 ~ 24450520 (+)
XLOC_030080 rhbdd3 coding downstream 3068 24882633 ~ 24886597 (+)
XLOC_030081 mrpl41 coding downstream 193329 25072894 ~ 25075179 (+)
XLOC_030082 paxx coding downstream 204820 25084385 ~ 25087292 (+)
XLOC_030083 NA coding downstream 368633 25248198 ~ 25249676 (+)
XLOC_030084 carnmt1 coding downstream 424934 25304499 ~ 25309549 (+)
XLOC_030071 NA non-coding upstream 595479 24261550 ~ 24278326 (+)
XLOC_030069 NA non-coding upstream 645449 24200665 ~ 24228356 (+)
XLOC_030085 NA non-coding downstream 431698 25311263 ~ 25314752 (+)
XLOC_030090 NA non-coding downstream 821460 25701025 ~ 25710432 (+)
XLOC_030094 dre-mir-204-1 non-coding downstream 1092503 25972068 ~ 25972160 (+)
XLOC_030106 NA non-coding downstream 1600109 26479674 ~ 26481301 (+)

Expression


Co-expression Network